Variant report

Variant	rs11836369
Chromosome Location	chr12:44882236-44882237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10161119	1.00[AMR][1000 genomes]
rs11182540	1.00[AMR][1000 genomes]
rs11834792	1.00[AMR][1000 genomes]
rs12296478	1.00[AMR][1000 genomes]
rs12297768	1.00[AMR][1000 genomes]
rs12298472	1.00[AMR][1000 genomes]
rs12304543	1.00[AMR][1000 genomes]
rs12309120	1.00[AMR][1000 genomes]
rs12313496	1.00[AMR][1000 genomes]
rs12321099	0.85[AFR][1000 genomes]
rs17094615	0.82[AFR][1000 genomes]
rs55923007	0.83[AFR][1000 genomes]
rs55956897	0.92[AFR][1000 genomes]
rs73094339	0.82[AFR][1000 genomes]
rs73094354	0.82[AFR][1000 genomes]
rs7958792	0.86[AFR][1000 genomes]
rs7974071	1.00[AMR][1000 genomes]
rs7975163	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44880600-44888400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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