Variant report

Variant	rs17094615
Chromosome Location	chr12:44801627-44801628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10506248	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11836369	0.82[AFR][1000 genomes]
rs17094494	0.83[EUR][1000 genomes]
rs17094697	0.81[EUR][1000 genomes]
rs17121314	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs1948461	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068103	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs55923007	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55956897	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57673436	0.83[EUR][1000 genomes]
rs73094339	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094354	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73096306	0.81[EUR][1000 genomes]
rs7310784	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs7310993	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs7955106	1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes]
rs7958792	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44799600-44802400	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links