Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44887733..44889993-chr12:44891692..44893770,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506248	0.84[EUR][1000 genomes]
rs11836369	0.92[AFR][1000 genomes]
rs12321099	0.85[AFR][1000 genomes]
rs17094494	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094615	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17094697	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121314	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948461	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068103	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923007	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57673436	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61035347	1.00[ASN][1000 genomes]
rs73094339	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094354	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096306	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096326	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096328	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096336	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310784	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310993	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74085178	1.00[ASN][1000 genomes]
rs7955106	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958792	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44888400-44889400	ZNF genes & repeats	Pancreas	Pancrea
2	chr12:44888600-44889000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:44888600-44894000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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