Variant report

Variant	rs12321099
Chromosome Location	chr12:44905681-44905682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11836369	0.85[AFR][1000 genomes]
rs55956897	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44900200-44912600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr12:44900200-44915400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:44901200-44913800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr12:44901400-44917400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:44901800-44913400	Weak transcription	Fetal Brain Female	brain
6	chr12:44901800-44926800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:44902600-44926200	Weak transcription	Brain Germinal Matrix	brain
8	chr12:44903200-44913400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:44904600-44906200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr12:44904600-44936600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr12:44904800-44925600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:44905400-44913400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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