Variant report

Variant	rs11835234
Chromosome Location	chr12:10184861-10184862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505747	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11831360	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5011267	0.85[ASN][1000 genomes]
rs58945086	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59462804	0.90[ASN][1000 genomes]
rs60021747	1.00[EUR][1000 genomes]
rs60883745	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61459404	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73259758	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73259794	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10183000-10187200	Enhancers	HUVEC	blood vessel
2	chr12:10183600-10185000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr12:10184000-10185000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr12:10184200-10186800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:10184400-10185600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:10184400-10186000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:10184400-10186600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr12:10184600-10185000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:10184600-10185000	Flanking Active TSS	Placenta	Placenta
10	chr12:10184600-10185000	Enhancers	A549	lung
11	chr12:10184600-10186600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr12:10184600-10186600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:10184800-10186600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:10184800-10186600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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