Variant report

Variant	rs11835576
Chromosome Location	chr12:10306596-10306597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10305467..10306793-chr12:10342493..10344173,14	MCF-7	breast:
2	chr12:10305977..10306953-chr12:10328333..10329049,2	MCF-7	breast:
3	chr12:10305112..10307480-chr12:10310212..10312398,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11829333	1.00[AMR][1000 genomes]
rs11835291	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11836012	1.00[AMR][1000 genomes]
rs34441432	1.00[AMR][1000 genomes]
rs34593852	1.00[AMR][1000 genomes]
rs35297885	1.00[AMR][1000 genomes]
rs35557371	1.00[AMR][1000 genomes]
rs35863710	1.00[AMR][1000 genomes]
rs7132516	1.00[AMR][1000 genomes]
rs73262629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10305600-10306600	Active TSS	Fetal Brain Male	brain
2	chr12:10305600-10307000	Active TSS	Brain Angular Gyrus	brain
3	chr12:10305600-10307000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr12:10305800-10306600	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr12:10305800-10306600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:10305800-10306600	Active TSS	Brain Germinal Matrix	brain
7	chr12:10305800-10306600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr12:10305800-10306600	Flanking Active TSS	Fetal Muscle Leg	muscle
9	chr12:10305800-10306600	Active TSS	Rectal Smooth Muscle	rectum
10	chr12:10305800-10306600	Active TSS	Stomach Mucosa	stomach
11	chr12:10305800-10306800	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr12:10305800-10306800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
13	chr12:10305800-10306800	Active TSS	Brain Hippocampus Middle	brain
14	chr12:10305800-10306800	Active TSS	Fetal Kidney	kidney
15	chr12:10305800-10307000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:10305800-10307000	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr12:10305800-10307000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr12:10305800-10307000	Active TSS	Colon Smooth Muscle	Colon
19	chr12:10305800-10307000	Active TSS	Fetal Brain Female	brain
20	chr12:10305800-10307000	Active TSS	Right Ventricle	heart
21	chr12:10305800-10307000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr12:10305800-10307000	Active TSS	NH-A	brain
23	chr12:10306000-10306600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr12:10306000-10306600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:10306000-10306600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:10306000-10306600	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr12:10306000-10306600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:10306000-10306600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr12:10306000-10306600	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr12:10306000-10306600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr12:10306000-10306600	Active TSS	Brain Substantia Nigra	brain
32	chr12:10306000-10306600	Active TSS	Fetal Intestine Small	intestine
33	chr12:10306000-10306600	Active TSS	Ovary	ovary
34	chr12:10306000-10306600	Active TSS	Psoas Muscle	Psoas
35	chr12:10306000-10306600	Active TSS	A549	lung
36	chr12:10306000-10306600	Flanking Active TSS	HMEC	breast
37	chr12:10306000-10306600	Active TSS	K562	blood
38	chr12:10306000-10306600	Active TSS	NHDF-Ad	bronchial
39	chr12:10306000-10306600	Flanking Active TSS	NHLF	lung
40	chr12:10306000-10306800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr12:10306000-10306800	Active TSS	H1 Cell Line	embryonic stem cell
42	chr12:10306000-10306800	Active TSS	H9 Cell Line	embryonic stem cell
43	chr12:10306000-10306800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:10306000-10306800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr12:10306000-10306800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
46	chr12:10306000-10306800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr12:10306000-10306800	Active TSS	Aorta	Aorta
48	chr12:10306000-10306800	Active TSS	Brain Anterior Caudate	brain
49	chr12:10306000-10306800	Active TSS	Duodenum Mucosa	Duodenum
50	chr12:10306000-10306800	Active TSS	Fetal Heart	heart

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