Variant report

Variant	rs11835291
Chromosome Location	chr12:10305104-10305105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11829333	1.00[AMR][1000 genomes]
rs11835576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11836012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34441432	1.00[AMR][1000 genomes]
rs34593852	1.00[AMR][1000 genomes]
rs34651159	0.80[AFR][1000 genomes]
rs35297885	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35557371	1.00[AMR][1000 genomes]
rs35863710	1.00[AMR][1000 genomes]
rs7132516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10303200-10305800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:10304800-10306000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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