Variant report

Variant	rs34651159
Chromosome Location	chr12:10322201-10322202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11829333	0.82[AFR][1000 genomes]
rs11835291	0.80[AFR][1000 genomes]
rs12099556	1.00[AMR][1000 genomes]
rs34441432	0.86[AFR][1000 genomes]
rs34469239	1.00[EUR][1000 genomes]
rs35294307	1.00[EUR][1000 genomes]
rs35297885	0.80[AFR][1000 genomes]
rs7132516	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10318800-10323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:10319000-10322800	Enhancers	Hela-S3	cervix
3	chr12:10319200-10326200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr12:10320400-10322600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:10320800-10322800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:10320800-10323200	Weak transcription	Primary B cells from cord blood	blood
7	chr12:10321600-10322800	Flanking Active TSS	A549	lung
8	chr12:10321800-10322600	Weak transcription	Placenta	Placenta
9	chr12:10321800-10322800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr12:10321800-10323000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:10321800-10324800	Weak transcription	NHLF	lung
12	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:10322000-10322400	Weak transcription	NHEK	skin
14	chr12:10322000-10327600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:10322200-10323200	Weak transcription	Brain Hippocampus Middle	brain
16	chr12:10322200-10323400	Enhancers	HMEC	breast
17	chr12:10322200-10324400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links