Variant report

Variant	rs11835991
Chromosome Location	chr12:104944150-104944151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104938854..104940380-chr12:104941878..104944270,2	K562	blood:
2	chr12:104935546..104938743-chr12:104941604..104945727,4	MCF-7	breast:
3	chr12:104939073..104940663-chr12:104943081..104945935,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10450734	1.00[ASW][hapmap]
rs11833657	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs12297080	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12309132	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12316883	1.00[ASW][hapmap]
rs73384169	1.00[AFR][1000 genomes]
rs73384185	1.00[AFR][1000 genomes]
rs7977435	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104930200-104957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:104935200-104947400	Weak transcription	Aorta	Aorta
3	chr12:104935400-104946400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:104935400-104947000	Weak transcription	Primary T cells from cord blood	blood
5	chr12:104939000-104946600	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:104939200-104944800	Weak transcription	Brain Germinal Matrix	brain
7	chr12:104939200-104945400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:104939200-104951200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:104939400-104945000	Weak transcription	HSMMtube	muscle
10	chr12:104939800-104945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:104939800-104946600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:104939800-104947400	Weak transcription	Spleen	Spleen
13	chr12:104939800-104948000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:104939800-104948000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr12:104940400-104945600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr12:104940600-104958000	Weak transcription	K562	blood
17	chr12:104941000-104946400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr12:104941200-104944800	Weak transcription	GM12878-XiMat	blood
19	chr12:104941200-104949200	Weak transcription	Fetal Brain Female	brain
20	chr12:104941200-104951400	Weak transcription	Thymus	Thymus
21	chr12:104941400-104944200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr12:104941400-104945000	Weak transcription	Brain Anterior Caudate	brain
23	chr12:104941400-104946400	Weak transcription	NHEK	skin
24	chr12:104941400-104948000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:104941400-104948800	Weak transcription	Fetal Thymus	thymus
26	chr12:104941400-104949400	Weak transcription	Lung	lung
27	chr12:104941400-104959400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr12:104941800-104944400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr12:104942000-104947800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:104942000-104957600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr12:104942600-104945800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:104942800-104948800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr12:104943000-104944400	Enhancers	A549	lung
34	chr12:104943000-104944600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr12:104943200-104944200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr12:104943400-104944200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr12:104943400-104944400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr12:104943400-104946600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr12:104943600-104944200	Enhancers	Primary hematopoietic stem cells	blood
40	chr12:104943600-104944400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr12:104943600-104944600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:104943600-104945200	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr12:104943600-104945800	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr12:104943800-104944200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:104943800-104944200	Enhancers	HMEC	breast
46	chr12:104943800-104944200	Enhancers	HUVEC	blood vessel
47	chr12:104943800-104944200	Enhancers	Osteobl	bone
48	chr12:104943800-104944600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr12:104943800-104944600	Enhancers	Fetal Lung	lung
50	chr12:104943800-104944600	Enhancers	Fetal Stomach	stomach

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