Variant report

Variant	rs12297080
Chromosome Location	chr12:104927350-104927351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104919574..104922787-chr12:104926132..104929881,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10450734	1.00[ASW][hapmap]
rs11833657	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11835991	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12306264	1.00[MEX][hapmap]
rs12306787	1.00[MEX][hapmap]
rs12306794	1.00[MEX][hapmap]
rs12309132	1.00[YRI][hapmap]
rs12316883	1.00[ASW][hapmap]
rs12317943	1.00[MEX][hapmap]
rs7977435	1.00[ASW][hapmap]
rs9888352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104915600-104936600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:104917800-104928200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr12:104918000-104934200	Weak transcription	A549	lung
4	chr12:104918200-104928200	Weak transcription	Osteobl	bone
5	chr12:104918200-104928400	Weak transcription	Ovary	ovary
6	chr12:104918400-104927400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:104918400-104928200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:104918600-104927600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:104919200-104935000	Weak transcription	Primary T cells from cord blood	blood
10	chr12:104919400-104928000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr12:104920400-104927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:104920600-104929400	Weak transcription	Colon Smooth Muscle	Colon
13	chr12:104921000-104929200	Weak transcription	Right Ventricle	heart
14	chr12:104921200-104928000	Weak transcription	K562	blood
15	chr12:104921200-104928400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:104921400-104928000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:104921400-104928000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr12:104921400-104931600	Weak transcription	Gastric	stomach
19	chr12:104921400-104939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:104922200-104928400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr12:104923000-104927800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:104923000-104927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr12:104923200-104930200	Weak transcription	NHEK	skin
24	chr12:104923400-104928200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:104923400-104929800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:104923400-104930000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:104923600-104928000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:104924000-104930600	Weak transcription	Placenta	Placenta
29	chr12:104924400-104927400	Weak transcription	Primary B cells from cord blood	blood
30	chr12:104924800-104927400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr12:104924800-104939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr12:104925400-104930600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr12:104925400-104931000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr12:104925600-104927600	Enhancers	Primary T cells fromperipheralblood	blood
35	chr12:104925600-104928400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr12:104925600-104929200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr12:104925600-104931400	Enhancers	Primary B cells from peripheral blood	blood
38	chr12:104925800-104927600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr12:104925800-104929000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:104926000-104928000	Weak transcription	Spleen	Spleen
41	chr12:104926000-104928600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr12:104926000-104930200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr12:104926000-104931000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr12:104926200-104927600	Weak transcription	Dnd41	blood
45	chr12:104926600-104927600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr12:104926600-104927600	Enhancers	Pancreas	Pancrea
47	chr12:104926600-104928400	Weak transcription	Lung	lung
48	chr12:104926600-104928600	Enhancers	Primary hematopoietic stem cells	blood
49	chr12:104926600-104929200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr12:104926600-104930400	Enhancers	Primary T helper cells PMA-I stimulated	--

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