Variant report

Variant	rs11836752
Chromosome Location	chr12:10658308-10658309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr12:10658107-10658539	GM12878	blood:	n/a	chr12:10658484-10658495

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:10658281-10658331	ovcar-3	ovarian:	n/a
2	chr12:10658281-10658331	AoSMC	blood vessel:	n/a
3	chr12:10658281-10658331	SK-N-MC	brain:	n/a
4	chr12:10658281-10658331	Jurkat	blood:	n/a
5	chr12:10658281-10658331	HCPEpiC	choroid plexus:	n/a
6	chr12:10658281-10658331	HepG2	liver:	n/a
7	chr12:10658281-10658331	GM12878	blood:	n/a
8	chr12:10658281-10658331	AG04449	skin:	fetal
9	chr12:10658281-10658331	HRPEpiC	eye:	n/a
10	chr12:10658281-10658331	MCF-7	breast:	n/a
11	chr12:10658281-10658331	Caco-2	colon:	n/a
12	chr12:10658281-10658331	SK-N-SH	brain:	n/a
13	chr12:10658281-10658331	HRCEpiC	kidney:	n/a
14	chr12:10658281-10658331	SAEC	small airway:	n/a
15	chr12:10658281-10658331	BJ	skin:	n/a
16	chr12:10658281-10658331	AG04450	lung:	fetal
17	chr12:10658281-10658331	HAEpiC	amniotic membrane:	n/a
18	chr12:10658281-10658331	GM06990	blood:	n/a
19	chr12:10658281-10658331	HNPCEpiC	eye:	n/a
20	chr12:10658281-10658331	HEEpiC	esophagus:	n/a
21	chr12:10658281-10658331	PrEC	prostate:	n/a
22	chr12:10658281-10658331	H1-hESC	embryonic stem cell:	embryo
23	chr12:10658281-10658331	AG09319	gingival:	n/a
24	chr12:10658281-10658331	HL-60	blood:	n/a
25	chr12:10658281-10658331	U87	brain:	n/a
26	chr12:10658281-10658331	GM12892	blood:	n/a
27	chr12:10658281-10658331	ECC-1	luminal epithelium:	n/a
28	chr12:10658281-10658331	HIPEpiC	eye:	n/a
29	chr12:10658281-10658331	HUVEC	blood vessel:	n/a
30	chr12:10658281-10658331	CMK	blood:	n/a
31	chr12:10658281-10658331	PANC-1	pancreas:	n/a
32	chr12:10658281-10658331	NH-A	brain:	n/a
33	chr12:10658281-10658331	HMEC	breast:	n/a
34	chr12:10658281-10658331	T-47D	breast:	n/a
35	chr12:10658281-10658331	LNCaP	prostate:	n/a
36	chr12:10658281-10658331	Hela-S3	cervix:	n/a
37	chr12:10658281-10658331	MCF10A-Er-Src	breast:	n/a
38	chr12:10658281-10658331	ProgFib	skin:	n/a
39	chr12:10658281-10658331	HCF	heart:	n/a
40	chr12:10658281-10658331	HRE	kidney:	n/a
41	chr12:10658281-10658331	AG10803	skin:	n/a
42	chr12:10658281-10658331	PFSK-1	brain:	n/a
43	chr12:10658281-10658331	SKMC	muscle:	n/a
44	chr12:10658281-10658331	SK-N-SH_RA	brain:	n/a
45	chr12:10658281-10658331	K562	blood:	n/a
46	chr12:10658281-10658331	IMR90	lung:	fetal
47	chr12:10658281-10658331	GM12891	blood:	n/a
48	chr12:10658281-10658331	HEK293	kidney:	embryo
49	chr12:10658281-10658331	NB4	blood:	n/a
50	chr12:10658281-10658331	A549	lung:	n/a

No data

Variant related genes	Relation type
ENSG00000180574	TF binding region
ENSG00000180574	CpG island

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11829878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11834918	0.85[AFR][1000 genomes]
rs11837460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11837508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11838020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35744486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55791361	0.85[AMR][1000 genomes]
rs56376856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56801111	0.80[AFR][1000 genomes]
rs57025730	0.80[AFR][1000 genomes]
rs57430351	0.85[AFR][1000 genomes]
rs57578974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58048825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59364841	1.00[AMR][1000 genomes]
rs60400937	0.80[AFR][1000 genomes]
rs61345517	0.85[AFR][1000 genomes]
rs73254038	0.80[AFR][1000 genomes]
rs73258282	1.00[AMR][1000 genomes]
rs73260311	1.00[AMR][1000 genomes]
rs73260316	0.92[AMR][1000 genomes]
rs73260381	1.00[AMR][1000 genomes]
rs73264198	0.80[AFR][1000 genomes]
rs73264201	0.85[AFR][1000 genomes]
rs73266182	0.81[AFR][1000 genomes]
rs7971609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8914	chr12:10532300-10662676	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv557456	chr12:10532326-10698255	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv898764	chr12:10537269-10698255	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv898765	chr12:10537269-10701992	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv898766	chr12:10537269-10722585	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv557457	chr12:10545925-10698255	Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv557458	chr12:10546140-10698255	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv557459	chr12:10560591-10729821	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv557477	chr12:10601690-10698255	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv557478	chr12:10604945-10698255	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv898772	chr12:10622047-10722585	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv557479	chr12:10644663-10729821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1042090	chr12:10646985-10695398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv973197	chr12:10650348-10662298	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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