Variant report

Variant	rs11837080
Chromosome Location	chr12:47372389-47372390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2263489	1.00[AMR][1000 genomes]
rs2263490	1.00[AMR][1000 genomes]
rs2408637	1.00[AMR][1000 genomes]
rs2465200	1.00[AMR][1000 genomes]
rs2465590	1.00[AMR][1000 genomes]
rs2465600	1.00[AMR][1000 genomes]
rs2465619	1.00[AMR][1000 genomes]
rs2465620	1.00[AMR][1000 genomes]
rs2465622	1.00[AMR][1000 genomes]
rs2465633	1.00[AMR][1000 genomes]
rs2465636	1.00[AMR][1000 genomes]
rs2952970	1.00[AMR][1000 genomes]
rs2953359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47359800-47377400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:47360000-47375000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:47371800-47372400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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