Variant report

Variant	rs2465590
Chromosome Location	chr12:47307203-47307204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11837080	1.00[AMR][1000 genomes]
rs2263488	0.97[AFR][1000 genomes]
rs2263489	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2263490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2408637	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2465200	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2465600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2465619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2465620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2465622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2465633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2465636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2952970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2953359	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv973062	chr12:47298309-47308954	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47303000-47308000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:47303000-47311000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:47303200-47308400	Weak transcription	NHDF-Ad	bronchial
4	chr12:47304000-47311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:47305000-47308200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links