Variant report
Variant | rs11837316 |
---|---|
Chromosome Location | chr12:40907021-40907022 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
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rs_ID | r2[population] |
---|---|
rs1122621 | 1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes] |
rs1122863 | 1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes] |
rs11564109 | 0.87[CEU][hapmap] |
rs11835808 | 1.00[CEU][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes] |
rs1492328 | 0.97[AFR][1000 genomes] |
rs1492329 | 1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes] |
rs17128391 | 1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes] |
rs17128401 | 1.00[CEU][hapmap];0.84[YRI][hapmap] |
rs17128416 | 0.88[AFR][1000 genomes] |
rs17529964 | 0.87[CEU][hapmap] |
rs17533153 | 0.94[CEU][hapmap] |
rs17599001 | 0.87[CEU][hapmap] |
rs17599042 | 0.87[CEU][hapmap] |
rs17599666 | 0.87[CEU][hapmap] |
rs17600388 | 0.87[CEU][hapmap] |
rs1992608 | 0.82[AFR][1000 genomes] |
rs4767983 | 1.00[CEU][hapmap];0.92[YRI][hapmap] |
rs4768288 | 0.88[AFR][1000 genomes] |
rs4768289 | 0.88[AFR][1000 genomes] |
rs4768291 | 0.87[CEU][hapmap] |
rs55642775 | 0.92[AFR][1000 genomes] |
rs56036709 | 0.92[AFR][1000 genomes] |
rs56226314 | 0.90[AFR][1000 genomes] |
rs56952712 | 0.92[AFR][1000 genomes] |
rs57161116 | 0.92[AFR][1000 genomes] |
rs59005564 | 0.92[AFR][1000 genomes] |
rs59095251 | 0.97[AFR][1000 genomes] |
rs59367732 | 0.96[AFR][1000 genomes] |
rs7309042 | 0.87[CEU][hapmap] |
rs73106618 | 0.88[AFR][1000 genomes] |
rs73106620 | 0.88[AFR][1000 genomes] |
rs73112026 | 0.96[AFR][1000 genomes] |
rs73114281 | 0.86[AFR][1000 genomes] |
rs73116206 | 0.92[AFR][1000 genomes] |
rs73119908 | 0.88[AFR][1000 genomes] |
rs7315186 | 0.87[CEU][hapmap] |
rs7959536 | 0.87[CEU][hapmap] |
rs7960976 | 0.87[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
2 | esv3519672 | chr12:40898422-40907859 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | esv3417437 | chr12:40900070-40907460 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv8970 | chr12:40904094-40951213 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | esv3351748 | chr12:40905885-40909783 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:40894800-40908600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr12:40905800-40908000 | Weak transcription | GM12878-XiMat | blood |
3 | chr12:40906800-40908000 | Weak transcription | HMEC | breast |