Variant report

Variant	rs4768289
Chromosome Location	chr12:40925108-40925109
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNTN1-1	chr12:40924859-40926084	XLOC_009713
2	lnc-CNTN1-1	chr12:40924859-40926084	NONHSAT027733

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1122621	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1122863	1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564109	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs11829565	0.82[EUR][1000 genomes]
rs11835808	1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11837316	0.88[AFR][1000 genomes]
rs1427262	1.00[JPT][hapmap]
rs1492328	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1492329	1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128391	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128401	1.00[JPT][hapmap]
rs17128416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17444202	1.00[JPT][hapmap]
rs17444709	1.00[JPT][hapmap]
rs17529964	1.00[JPT][hapmap]
rs17533153	1.00[JPT][hapmap]
rs17533321	0.82[EUR][1000 genomes]
rs17589334	1.00[JPT][hapmap]
rs17598156	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17599001	0.90[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17599042	0.90[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17599666	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs17600388	1.00[JPT][hapmap]
rs1873674	0.82[EUR][1000 genomes]
rs1992608	0.81[EUR][1000 genomes]
rs4767983	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs4768287	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4768288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768291	1.00[JPT][hapmap]
rs55642775	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55649806	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55818225	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56036709	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56211973	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56226314	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56952712	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57161116	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59005564	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59095251	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59367732	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7309042	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs73106618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73106620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73106623	0.82[EUR][1000 genomes]
rs73112007	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73112026	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73114281	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73114284	0.82[EUR][1000 genomes]
rs73116206	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73119908	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7315186	1.00[JPT][hapmap]
rs7959536	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs7960976	0.90[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv8970	chr12:40904094-40951213	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3388339	chr12:40917344-40931738	Enhancers Weak transcription	TF binding region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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