Variant report

Variant	rs11837849
Chromosome Location	chr12:10284238-10284239
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11833740	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11836494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910631	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910633	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17807926	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57679345	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10280600-10284600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:10281200-10285200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:10281400-10285000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:10282400-10284400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:10282600-10284600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:10282800-10284400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:10282800-10284400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:10283000-10285600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:10283000-10286200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:10283200-10284600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:10283200-10284600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:10283200-10285000	Weak transcription	NHEK	skin
13	chr12:10283400-10286000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:10283600-10284400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:10283600-10284400	Enhancers	Primary hematopoietic stem cells	blood
16	chr12:10283600-10285800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr12:10284000-10284400	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr12:10284000-10285000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr12:10284000-10285000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:10284000-10285400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr12:10284200-10284400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr12:10284200-10284600	Weak transcription	A549	lung
23	chr12:10284200-10285000	Enhancers	Placenta	Placenta
24	chr12:10284200-10285200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:10284200-10285200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:10284200-10285200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:10284200-10285800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr12:10284200-10285800	Enhancers	Monocytes-CD14+_RO01746	blood

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