Variant report

Variant	rs16910631
Chromosome Location	chr12:10281255-10281256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11833740	1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11836494	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11837849	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16910633	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17807926	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2130007	0.91[GIH][hapmap]
rs57679345	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs16910631	PRH1	cis	parietal	SCAN
rs16910631	PRR4	cis	parietal	SCAN
rs16910631	ACRBP	cis	parietal	SCAN
rs16910631	TAS2R10	cis	cerebellum	SCAN
rs16910631	TAS2R14	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10278600-10282400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:10280000-10282000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
3	chr12:10280400-10282800	Active TSS	Brain Hippocampus Middle	brain
4	chr12:10280600-10283200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr12:10280600-10284600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:10280800-10281400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr12:10280800-10281600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:10280800-10282800	Active TSS	Primary monocytes fromperipheralblood	blood
9	chr12:10281000-10281400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr12:10281000-10281600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:10281000-10281600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr12:10281000-10281600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr12:10281000-10281800	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr12:10281000-10282000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr12:10281000-10282200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:10281000-10282800	Active TSS	Brain Anterior Caudate	brain
17	chr12:10281000-10283000	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr12:10281200-10281400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
19	chr12:10281200-10281600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr12:10281200-10281600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr12:10281200-10281800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr12:10281200-10281800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr12:10281200-10281800	Active TSS	Adipose Nuclei	Adipose
24	chr12:10281200-10282800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:10281200-10282800	Active TSS	Duodenum Mucosa	Duodenum
26	chr12:10281200-10283000	Active TSS	Monocytes-CD14+_RO01746	blood
27	chr12:10281200-10285200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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