Variant report

Variant	rs11838119
Chromosome Location	chr12:57224812-57224813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11172083	1.00[EUR][1000 genomes]
rs11837790	1.00[CEU][hapmap]
rs12297756	1.00[EUR][1000 genomes]
rs17118901	1.00[CEU][hapmap]
rs17118921	1.00[CEU][hapmap]
rs34377647	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57244425	1.00[EUR][1000 genomes]
rs60301769	1.00[EUR][1000 genomes]
rs60957079	1.00[EUR][1000 genomes]
rs61303242	1.00[EUR][1000 genomes]
rs73332659	1.00[EUR][1000 genomes]
rs73332662	1.00[EUR][1000 genomes]
rs73332664	1.00[EUR][1000 genomes]
rs73332676	1.00[EUR][1000 genomes]
rs73332678	1.00[EUR][1000 genomes]
rs73332681	1.00[EUR][1000 genomes]
rs7977632	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57220400-57230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:57224000-57225000	Enhancers	Adipose Nuclei	Adipose
3	chr12:57224600-57225000	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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