Variant report

Variant	rs7977632
Chromosome Location	chr12:57053763-57053764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:57051978..57057362-chr12:57059430..57061597,6	K562	blood:
2	chr12:57029048..57031672-chr12:57053397..57055305,2	K562	blood:
3	chr12:57053497..57055656-chr12:57080876..57083065,2	MCF-7	breast:
4	chr12:57036892..57041043-chr12:57050765..57055659,6	MCF-7	breast:
5	chr12:57053284..57055911-chr12:57082138..57083741,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110958	Chromatin interaction
ENSG00000076108	Chromatin interaction
ENSG00000207031	Chromatin interaction
ENSG00000110955	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10876912	0.84[EUR][1000 genomes]
rs11171909	0.85[GIH][hapmap];0.84[EUR][1000 genomes]
rs11171910	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs11829496	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11831054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11833209	0.88[YRI][hapmap]
rs11833282	0.84[AFR][1000 genomes]
rs11837790	0.81[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];0.88[YRI][hapmap]
rs11838315	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12312913	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs12314491	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs12321649	0.84[EUR][1000 genomes]
rs1527140	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17118865	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17118901	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17118921	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17118953	0.81[ASW][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap]
rs17444925	0.91[EUR][1000 genomes]
rs17541679	0.91[EUR][1000 genomes]
rs1800638	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2030909	1.00[CEU][hapmap]
rs2470385	0.83[GIH][hapmap]
rs4262757	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55962252	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57406430	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59711560	0.84[EUR][1000 genomes]
rs60574031	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7136370	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7307573	0.82[EUR][1000 genomes]
rs7307578	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74091637	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095026	1.00[EUR][1000 genomes]
rs7954160	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7956952	0.91[EUR][1000 genomes]
rs7958515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974103	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974600	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941210	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs9738534	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57039800-57055800	Weak transcription	Gastric	stomach
2	chr12:57039800-57059200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:57040400-57056200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:57040400-57059200	Weak transcription	Aorta	Aorta
5	chr12:57040400-57059400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:57040400-57069400	Weak transcription	Right Atrium	heart
7	chr12:57040600-57054600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:57040600-57056400	Weak transcription	Brain Substantia Nigra	brain
9	chr12:57040600-57056400	Weak transcription	Colonic Mucosa	Colon
10	chr12:57040600-57056400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr12:57040600-57056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:57040600-57058200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:57040600-57058200	Weak transcription	Colon Smooth Muscle	Colon
14	chr12:57040600-57058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:57046200-57059400	Weak transcription	Lung	lung
16	chr12:57047000-57055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr12:57048000-57055600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:57048800-57056800	Weak transcription	Dnd41	blood
19	chr12:57049400-57056200	Weak transcription	Fetal Muscle Leg	muscle
20	chr12:57049800-57056200	Weak transcription	Left Ventricle	heart
21	chr12:57050200-57055800	Weak transcription	Fetal Stomach	stomach
22	chr12:57050800-57054200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr12:57051400-57056600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:57051400-57056800	Weak transcription	HSMM	muscle
25	chr12:57051400-57057800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr12:57051400-57058000	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:57051400-57058400	Weak transcription	Brain Angular Gyrus	brain
28	chr12:57051400-57058600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:57051600-57054800	Weak transcription	Fetal Thymus	thymus
30	chr12:57051600-57056400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr12:57051800-57055400	Weak transcription	A549	lung
32	chr12:57052000-57056200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr12:57052000-57059200	Weak transcription	Spleen	Spleen
34	chr12:57052200-57055600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:57052200-57055600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr12:57052400-57055600	Weak transcription	Adipose Nuclei	Adipose
37	chr12:57052400-57059200	Weak transcription	NHLF	lung
38	chr12:57052400-57078200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr12:57052600-57056200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr12:57052600-57059800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr12:57052800-57054800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:57053000-57056200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr12:57053000-57060200	Weak transcription	Right Ventricle	heart
44	chr12:57053200-57055200	Weak transcription	Fetal Intestine Large	intestine
45	chr12:57053200-57055400	Weak transcription	Fetal Intestine Small	intestine
46	chr12:57053200-57055600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr12:57053200-57055800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr12:57053200-57056600	Weak transcription	GM12878-XiMat	blood
49	chr12:57053200-57057600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr12:57053400-57055400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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