Variant report

Variant	rs74095026
Chromosome Location	chr12:57011911-57011912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:57010005..57012841-chr12:57025383..57028519,3	K562	blood:
2	chr12:57010024..57012085-chr12:57022612..57024595,2	K562	blood:
3	chr12:57009522..57015507-chr12:57021199..57030351,9	MCF-7	breast:
4	chr12:57010005..57012841-chr12:57024813..57028519,3	K562	blood:
5	chr12:57010590..57012820-chr12:57015477..57017795,2	MCF-7	breast:
6	chr12:57011192..57013564-chr12:57014925..57017700,3	K562	blood:
7	chr12:56579705..56582945-chr12:57008774..57012343,3	K562	blood:

Variant related genes	Relation type
ENSG00000076108	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10876912	0.84[EUR][1000 genomes]
rs11171909	0.84[EUR][1000 genomes]
rs11171910	0.84[EUR][1000 genomes]
rs11829496	0.82[EUR][1000 genomes]
rs11831054	1.00[EUR][1000 genomes]
rs11838315	0.82[EUR][1000 genomes]
rs12312913	0.84[EUR][1000 genomes]
rs12314491	0.84[EUR][1000 genomes]
rs12321649	0.84[EUR][1000 genomes]
rs1527140	0.84[EUR][1000 genomes]
rs17118865	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17118901	1.00[EUR][1000 genomes]
rs17118921	0.82[EUR][1000 genomes]
rs17444925	0.91[EUR][1000 genomes]
rs17541679	0.91[EUR][1000 genomes]
rs1800638	1.00[EUR][1000 genomes]
rs4262757	0.82[EUR][1000 genomes]
rs55962252	0.82[EUR][1000 genomes]
rs57406430	1.00[EUR][1000 genomes]
rs59711560	0.84[EUR][1000 genomes]
rs60574031	0.82[EUR][1000 genomes]
rs7136370	1.00[EUR][1000 genomes]
rs7307573	0.82[EUR][1000 genomes]
rs7307578	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74091637	1.00[EUR][1000 genomes]
rs7954160	1.00[EUR][1000 genomes]
rs7956952	0.91[EUR][1000 genomes]
rs7958515	1.00[EUR][1000 genomes]
rs7974103	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974600	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7977632	1.00[EUR][1000 genomes]
rs941210	0.84[EUR][1000 genomes]
rs9738534	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525202	chr12:57004668-57013844	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56977600-57017000	Strong transcription	Placenta	Placenta
2	chr12:56979600-57020400	Strong transcription	Fetal Stomach	stomach
3	chr12:56987600-57012000	Strong transcription	Liver	Liver
4	chr12:56987600-57014800	Strong transcription	Adipose Nuclei	Adipose
5	chr12:56987600-57021000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:56988200-57015600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:56988400-57016600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:56988400-57017400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:56988400-57018000	Strong transcription	Fetal Intestine Small	intestine
10	chr12:56988400-57018400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:56988400-57021600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:56988600-57012000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:56988600-57017200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr12:56988800-57012000	Strong transcription	NHDF-Ad	bronchial
15	chr12:56988800-57015200	Strong transcription	Duodenum Mucosa	Duodenum
16	chr12:56988800-57017600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:56988800-57021600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:56989000-57012200	Strong transcription	Osteobl	bone
19	chr12:56989000-57017600	Strong transcription	Fetal Intestine Large	intestine
20	chr12:56989400-57019000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr12:56989400-57020000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:56989600-57012800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr12:56989600-57013200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr12:56989600-57017400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr12:56989800-57014800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr12:56990000-57012200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:56990400-57016600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr12:56990600-57016400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr12:56990800-57013000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr12:56990800-57014000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr12:56990800-57016600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr12:56991000-57018000	Strong transcription	Fetal Muscle Leg	muscle
33	chr12:56991000-57022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr12:56991200-57012800	Strong transcription	Thymus	Thymus
35	chr12:56991400-57015000	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr12:56991400-57015000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr12:56991600-57015000	Strong transcription	Fetal Lung	lung
38	chr12:56991600-57017000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:56991600-57018200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr12:56992000-57015600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr12:56994200-57021200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr12:56995000-57021400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr12:56996400-57016200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr12:56996600-57016800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:57002600-57012000	Strong transcription	Dnd41	blood
46	chr12:57002600-57016200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr12:57002800-57015200	Strong transcription	NHEK	skin
48	chr12:57003000-57012000	Strong transcription	Primary T cells from cord blood	blood
49	chr12:57003000-57012000	Strong transcription	A549	lung
50	chr12:57003000-57012000	Strong transcription	Hela-S3	cervix

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