Variant report

Variant	rs11171910
Chromosome Location	chr12:57016559-57016560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:57012523..57015278-chr12:57016203..57018882,3	K562	blood:
2	chr12:57011192..57013564-chr12:57014925..57017700,3	K562	blood:
3	chr12:56973940..56975962-chr12:57014825..57017431,2	MCF-7	breast:
4	chr12:57003179..57005590-chr12:57016181..57017720,2	K562	blood:
5	chr12:57004812..57007762-chr12:57013196..57018019,5	MCF-7	breast:
6	chr12:57015174..57016840-chr12:57029011..57032012,3	K562	blood:
7	chr12:57016477..57018240-chr12:57022477..57024994,2	K562	blood:
8	chr12:57016483..57019322-chr12:57028568..57030287,2	MCF-7	breast:
9	chr12:57007666..57011093-chr12:57015836..57017709,3	MCF-7	breast:
10	chr12:57010590..57012820-chr12:57015477..57017795,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000076108	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10876912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11171909	1.00[ASW][hapmap];0.85[GIH][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11831054	0.84[EUR][1000 genomes]
rs11837790	1.00[CEU][hapmap]
rs12296335	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12312913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314491	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527140	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17118865	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs17118901	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17118921	1.00[CEU][hapmap]
rs17118953	0.85[GIH][hapmap]
rs1800638	0.84[EUR][1000 genomes]
rs2030909	1.00[CEU][hapmap]
rs2470385	0.83[GIH][hapmap]
rs57406430	0.84[EUR][1000 genomes]
rs59711560	1.00[EUR][1000 genomes]
rs7136370	0.84[EUR][1000 genomes]
rs7307578	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs74091637	0.84[EUR][1000 genomes]
rs74095026	0.84[EUR][1000 genomes]
rs7954160	0.84[EUR][1000 genomes]
rs7958515	0.84[EUR][1000 genomes]
rs7958539	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7974103	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs7974600	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7977632	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs941210	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56977600-57017000	Strong transcription	Placenta	Placenta
2	chr12:56979600-57020400	Strong transcription	Fetal Stomach	stomach
3	chr12:56987600-57021000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:56988400-57016600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:56988400-57017400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:56988400-57018000	Strong transcription	Fetal Intestine Small	intestine
7	chr12:56988400-57018400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr12:56988400-57021600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:56988600-57017200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:56988800-57017600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:56988800-57021600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:56989000-57017600	Strong transcription	Fetal Intestine Large	intestine
13	chr12:56989400-57019000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr12:56989400-57020000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:56989600-57017400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr12:56990400-57016600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr12:56990800-57016600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr12:56991000-57018000	Strong transcription	Fetal Muscle Leg	muscle
19	chr12:56991000-57022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:56991600-57017000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:56991600-57018200	Strong transcription	Fetal Muscle Trunk	muscle
22	chr12:56994200-57021200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:56995000-57021400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:56996600-57016800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:57003000-57016800	Strong transcription	Primary B cells from cord blood	blood
26	chr12:57003200-57017600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr12:57006200-57017800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:57009000-57017000	Weak transcription	Psoas Muscle	Psoas
29	chr12:57009800-57022200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:57010400-57022200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr12:57010800-57022000	Weak transcription	Small Intestine	intestine
32	chr12:57011000-57017600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr12:57011000-57021400	Weak transcription	Fetal Brain Male	brain
34	chr12:57011200-57017200	Weak transcription	Brain Substantia Nigra	brain
35	chr12:57011200-57017400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr12:57011200-57017600	Weak transcription	Pancreas	Pancrea
37	chr12:57011400-57017000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:57011400-57017200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr12:57011400-57017400	Weak transcription	Brain Hippocampus Middle	brain
40	chr12:57011400-57017400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr12:57011400-57017400	Weak transcription	Spleen	Spleen
42	chr12:57011400-57017600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr12:57011400-57021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr12:57011400-57022000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr12:57011400-57022000	Weak transcription	Brain Germinal Matrix	brain
46	chr12:57011400-57022200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr12:57011400-57022200	Weak transcription	Colonic Mucosa	Colon
48	chr12:57011400-57022200	Weak transcription	Stomach Mucosa	stomach
49	chr12:57011400-57022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:57011400-57022400	Weak transcription	H9 Cell Line	embryonic stem cell

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