Variant report

Variant	rs7958539
Chromosome Location	chr12:57019101-57019102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:57017329..57019814-chr12:57037234..57039904,2	MCF-7	breast:
2	chr12:57017250..57020685-chr12:57038536..57040931,3	K562	blood:
3	chr12:56567236..56569634-chr12:57017080..57019271,2	K562	blood:
4	chr12:57002945..57005417-chr12:57018458..57021236,3	K562	blood:
5	chr12:57006722..57009365-chr12:57018033..57019996,2	K562	blood:
6	chr12:57002945..57004692-chr12:57018540..57021236,2	K562	blood:
7	chr12:57016483..57019322-chr12:57028568..57030287,2	MCF-7	breast:
8	chr12:56989810..56992363-chr12:57017983..57019817,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110955	Chromatin interaction
ENSG00000139613	Chromatin interaction
ENSG00000076108	Chromatin interaction
ENSG00000207031	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10876912	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11171909	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11171910	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12296335	0.86[AMR][1000 genomes]
rs12312913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12314491	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12321649	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1527140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59711560	0.81[EUR][1000 genomes]
rs941210	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56979600-57020400	Strong transcription	Fetal Stomach	stomach
2	chr12:56987600-57021000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:56988400-57021600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:56988800-57021600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:56989400-57020000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:56991000-57022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:56994200-57021200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:56995000-57021400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:57009800-57022200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:57010400-57022200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:57010800-57022000	Weak transcription	Small Intestine	intestine
12	chr12:57011000-57021400	Weak transcription	Fetal Brain Male	brain
13	chr12:57011400-57021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:57011400-57022000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:57011400-57022000	Weak transcription	Brain Germinal Matrix	brain
16	chr12:57011400-57022200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr12:57011400-57022200	Weak transcription	Colonic Mucosa	Colon
18	chr12:57011400-57022200	Weak transcription	Stomach Mucosa	stomach
19	chr12:57011400-57022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:57011400-57022400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr12:57011400-57022400	Weak transcription	Aorta	Aorta
22	chr12:57011400-57022400	Weak transcription	Gastric	stomach
23	chr12:57011400-57022600	Weak transcription	Esophagus	oesophagus
24	chr12:57011800-57021800	Strong transcription	Fetal Thymus	thymus
25	chr12:57011800-57022200	Weak transcription	Fetal Brain Female	brain
26	chr12:57013800-57019800	Strong transcription	GM12878-XiMat	blood
27	chr12:57014000-57019800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr12:57015000-57019600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr12:57015000-57020000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr12:57015000-57022000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr12:57015200-57020000	Weak transcription	NHEK	skin
32	chr12:57015200-57022000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:57015400-57019600	Weak transcription	Dnd41	blood
34	chr12:57015400-57020000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:57015400-57021000	Weak transcription	Lung	lung
36	chr12:57015400-57022200	Weak transcription	Fetal Kidney	kidney
37	chr12:57015600-57022000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr12:57015600-57022200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr12:57016200-57021000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
40	chr12:57016400-57020800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr12:57016600-57020200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr12:57016600-57021000	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr12:57016800-57019800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr12:57016800-57022000	Weak transcription	HUVEC	blood vessel
45	chr12:57017000-57019800	Weak transcription	Placenta	Placenta
46	chr12:57017000-57020000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr12:57017200-57019200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr12:57017400-57019800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr12:57017400-57020000	Strong transcription	Primary B cells from cord blood	blood
50	chr12:57017400-57020200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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