Variant report

Variant	rs7954160
Chromosome Location	chr12:57048136-57048137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57038666..57040216-chr12:57046817..57048324,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207031	Chromatin interaction
ENSG00000110955	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10876912	0.84[EUR][1000 genomes]
rs11171909	0.84[EUR][1000 genomes]
rs11171910	0.84[EUR][1000 genomes]
rs11829496	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11831054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11833282	0.87[AFR][1000 genomes]
rs11838315	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12312913	0.84[EUR][1000 genomes]
rs12314491	0.84[EUR][1000 genomes]
rs12321649	0.84[EUR][1000 genomes]
rs1527140	0.84[EUR][1000 genomes]
rs17118865	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17118901	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17118921	0.82[EUR][1000 genomes]
rs17444925	0.91[EUR][1000 genomes]
rs17541679	0.91[EUR][1000 genomes]
rs1800638	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4262757	0.82[EUR][1000 genomes]
rs55962252	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57406430	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59711560	0.84[EUR][1000 genomes]
rs60574031	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7136370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7307573	0.82[EUR][1000 genomes]
rs7307578	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74091637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095026	1.00[EUR][1000 genomes]
rs7956952	0.91[EUR][1000 genomes]
rs7958515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974103	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974600	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7977632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941210	0.84[EUR][1000 genomes]
rs9738534	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57039800-57055800	Weak transcription	Gastric	stomach
2	chr12:57039800-57059200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:57040400-57056200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:57040400-57059200	Weak transcription	Aorta	Aorta
5	chr12:57040400-57059400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:57040400-57069400	Weak transcription	Right Atrium	heart
7	chr12:57040600-57054600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:57040600-57056400	Weak transcription	Brain Substantia Nigra	brain
9	chr12:57040600-57056400	Weak transcription	Colonic Mucosa	Colon
10	chr12:57040600-57056400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr12:57040600-57056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:57040600-57058200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:57040600-57058200	Weak transcription	Colon Smooth Muscle	Colon
14	chr12:57040600-57058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:57046200-57051800	Weak transcription	Spleen	Spleen
16	chr12:57046200-57059400	Weak transcription	Lung	lung
17	chr12:57047000-57055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:57048000-57055600	Weak transcription	Stomach Smooth Muscle	stomach

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