The 2.0 version of rSNPBase

Variant report

Variant rs17541679
Chromosome Location chr12:57053059-57053060
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:57039800-57055800 Weak transcription Gastric stomach
2 chr12:57039800-57059200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr12:57040400-57056200 Weak transcription Fetal Muscle Trunk muscle
4 chr12:57040400-57059200 Weak transcription Aorta Aorta
5 chr12:57040400-57059400 Weak transcription Placenta Amnion Placenta Amnion
6 chr12:57040400-57069400 Weak transcription Right Atrium heart
7 chr12:57040600-57054600 Weak transcription Muscle Satellite Cultured Cells --
8 chr12:57040600-57056400 Weak transcription Brain Substantia Nigra brain
9 chr12:57040600-57056400 Weak transcription Colonic Mucosa Colon
10 chr12:57040600-57056400 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr12:57040600-57056800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr12:57040600-57058200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr12:57040600-57058200 Weak transcription Colon Smooth Muscle Colon
14 chr12:57040600-57058800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr12:57046200-57059400 Weak transcription Lung lung
16 chr12:57047000-57055600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr12:57048000-57055600 Weak transcription Stomach Smooth Muscle stomach
18 chr12:57048800-57056800 Weak transcription Dnd41 blood
19 chr12:57049400-57056200 Weak transcription Fetal Muscle Leg muscle
20 chr12:57049800-57056200 Weak transcription Left Ventricle heart
21 chr12:57050200-57055800 Weak transcription Fetal Stomach stomach
22 chr12:57050800-57054200 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr12:57051200-57053200 Enhancers GM12878-XiMat blood
24 chr12:57051400-57056600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr12:57051400-57056800 Weak transcription HSMM muscle
26 chr12:57051400-57057800 Weak transcription Brain Cingulate Gyrus brain
27 chr12:57051400-57058000 Weak transcription Brain Hippocampus Middle brain
28 chr12:57051400-57058400 Weak transcription Brain Angular Gyrus brain
29 chr12:57051400-57058600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr12:57051600-57054800 Weak transcription Fetal Thymus thymus
31 chr12:57051600-57056400 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr12:57051800-57055400 Weak transcription A549 lung
33 chr12:57052000-57056200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr12:57052000-57059200 Weak transcription Spleen Spleen
35 chr12:57052200-57055600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr12:57052200-57055600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr12:57052400-57053200 Enhancers Primary B cells from peripheral blood blood
38 chr12:57052400-57055600 Weak transcription Adipose Nuclei Adipose
39 chr12:57052400-57059200 Weak transcription NHLF lung
40 chr12:57052400-57078200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr12:57052600-57053200 Enhancers Fetal Intestine Small intestine
42 chr12:57052600-57056200 Weak transcription Duodenum Mucosa Duodenum
43 chr12:57052600-57059800 Weak transcription Primary hematopoietic stem cells blood
44 chr12:57052800-57053200 Enhancers Fetal Intestine Large intestine
45 chr12:57052800-57054800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr12:57053000-57053200 Enhancers Rectal Mucosa Donor 29 rectum
47 chr12:57053000-57056200 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr12:57053000-57060200 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015