Variant report

Variant	rs11839205
Chromosome Location	chr13:98020737-98020738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11843522	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1553010	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs1553011	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs17301432	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs3782984	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782986	1.00[CEU][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7992346	0.91[CEU][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875104	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs9300406	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9513238	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9516916	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9582128	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9584563	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9584565	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr13:97992800-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
5	chr13:98002400-98027200	Weak transcription	Lung	lung
6	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
7	chr13:98002600-98021600	Weak transcription	Colonic Mucosa	Colon
8	chr13:98003200-98021200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:98004000-98021000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr13:98005400-98021600	Weak transcription	Thymus	Thymus
11	chr13:98010000-98027400	Weak transcription	Esophagus	oesophagus
12	chr13:98010800-98027400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr13:98011800-98020800	Weak transcription	Stomach Mucosa	stomach
14	chr13:98013800-98021200	Weak transcription	NHEK	skin
15	chr13:98015200-98036600	Weak transcription	Fetal Heart	heart
16	chr13:98015800-98023600	Weak transcription	Gastric	stomach
17	chr13:98017000-98021000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr13:98017200-98023600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr13:98017400-98021000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr13:98018400-98025000	Weak transcription	Fetal Brain Male	brain
21	chr13:98018600-98021200	Weak transcription	Primary B cells from cord blood	blood
22	chr13:98018600-98021200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr13:98018600-98021400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr13:98018600-98021400	Enhancers	Brain Angular Gyrus	brain
25	chr13:98018600-98021600	Enhancers	Brain Cingulate Gyrus	brain
26	chr13:98019000-98020800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:98019400-98020800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr13:98019400-98021000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr13:98019600-98021000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr13:98019600-98021200	Enhancers	Colon Smooth Muscle	Colon
31	chr13:98019600-98021400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:98019600-98021400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:98019600-98021400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr13:98019600-98021400	Enhancers	Osteobl	bone
35	chr13:98019800-98021000	Weak transcription	Fetal Kidney	kidney
36	chr13:98019800-98021200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr13:98019800-98021600	Weak transcription	Brain Germinal Matrix	brain
38	chr13:98020000-98021000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr13:98020000-98021000	Weak transcription	A549	lung
40	chr13:98020000-98021200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr13:98020000-98021200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr13:98020000-98021200	Weak transcription	HMEC	breast
43	chr13:98020000-98021400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr13:98020000-98021400	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr13:98020000-98021400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr13:98020000-98021400	Enhancers	Adipose Nuclei	Adipose
47	chr13:98020000-98021400	Weak transcription	Right Ventricle	heart
48	chr13:98020000-98021800	Weak transcription	Fetal Thymus	thymus
49	chr13:98020000-98023600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr13:98020000-98025400	Weak transcription	Pancreas	Pancrea

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