Variant report

Variant	rs9584565
Chromosome Location	chr13:98027229-98027230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11839205	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11843522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1553010	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs1553011	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs17301432	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs3782984	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3782986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992346	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs875104	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs9300406	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9513238	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9516916	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9582128	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9584563	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
3	chr13:98010000-98027400	Weak transcription	Esophagus	oesophagus
4	chr13:98010800-98027400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:98015200-98036600	Weak transcription	Fetal Heart	heart
6	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
7	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:98020800-98031000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:98022000-98027400	Weak transcription	Fetal Thymus	thymus
11	chr13:98022000-98027400	Weak transcription	A549	lung
12	chr13:98022000-98027400	Weak transcription	NH-A	brain
13	chr13:98022000-98036600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:98022000-98038600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr13:98022000-98039000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr13:98022000-98043400	Weak transcription	Stomach Mucosa	stomach
17	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
18	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:98022200-98033000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:98022200-98037200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr13:98022200-98038200	Weak transcription	Dnd41	blood
22	chr13:98022200-98038600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr13:98022200-98042600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr13:98022400-98028400	Strong transcription	HUVEC	blood vessel
25	chr13:98022600-98043800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr13:98023200-98035600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:98023400-98041600	Strong transcription	Liver	Liver
28	chr13:98023600-98029000	Strong transcription	Adipose Nuclei	Adipose
29	chr13:98023600-98029400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr13:98023600-98029600	Strong transcription	Ovary	ovary
31	chr13:98023600-98031000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr13:98023600-98035600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr13:98023600-98045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr13:98024000-98044600	Weak transcription	GM12878-XiMat	blood
35	chr13:98025000-98039200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr13:98025600-98028800	Strong transcription	Fetal Muscle Leg	muscle
37	chr13:98025800-98027400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:98025800-98033200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:98025800-98034400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr13:98026200-98029400	Weak transcription	Fetal Brain Female	brain
41	chr13:98026400-98045200	Weak transcription	Fetal Brain Male	brain
42	chr13:98026600-98028400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr13:98026600-98028800	Strong transcription	Fetal Intestine Small	intestine
44	chr13:98026600-98029000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:98026800-98028000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr13:98026800-98028600	Strong transcription	Primary T cells from cord blood	blood
47	chr13:98026800-98028600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr13:98026800-98028800	Strong transcription	Placenta	Placenta
49	chr13:98026800-98028800	Strong transcription	HSMM	muscle
50	chr13:98026800-98030800	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links