Variant report

Variant	rs11839208
Chromosome Location	chr13:40232721-40232722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11840841	1.00[AMR][1000 genomes]
rs73459943	1.00[AMR][1000 genomes]
rs73463989	1.00[AMR][1000 genomes]
rs7997300	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1054797	chr13:40198744-40618428	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541755	chr13:40198744-40618428	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv832586	chr13:40222880-40379063	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40230600-40234400	Weak transcription	Placenta	Placenta
2	chr13:40230600-40252200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:40230600-40254600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:40230600-40254600	Weak transcription	Lung	lung
5	chr13:40230600-40254800	Weak transcription	Aorta	Aorta
6	chr13:40230600-40263800	Weak transcription	Spleen	Spleen
7	chr13:40230800-40233000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr13:40230800-40234200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:40230800-40235400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr13:40230800-40236000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr13:40230800-40236200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr13:40230800-40236200	Weak transcription	Fetal Intestine Small	intestine
13	chr13:40230800-40238800	Weak transcription	Fetal Kidney	kidney
14	chr13:40230800-40238800	Weak transcription	HSMM	muscle
15	chr13:40230800-40239400	Weak transcription	HSMMtube	muscle
16	chr13:40230800-40239600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:40230800-40239800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:40230800-40240000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr13:40230800-40246600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:40230800-40254600	Weak transcription	Left Ventricle	heart
21	chr13:40230800-40254600	Weak transcription	Psoas Muscle	Psoas
22	chr13:40230800-40254800	Weak transcription	Fetal Thymus	thymus
23	chr13:40230800-40256400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr13:40230800-40258400	Weak transcription	Colonic Mucosa	Colon
25	chr13:40230800-40262000	Weak transcription	Thymus	Thymus
26	chr13:40230800-40275000	Weak transcription	Right Ventricle	heart
27	chr13:40231000-40232800	Weak transcription	Brain Hippocampus Middle	brain
28	chr13:40231000-40232800	Weak transcription	Fetal Brain Female	brain
29	chr13:40231000-40232800	Weak transcription	Fetal Intestine Large	intestine
30	chr13:40231000-40233000	Enhancers	Primary T cells from cord blood	blood
31	chr13:40231000-40233600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr13:40231000-40233600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr13:40231000-40233600	Weak transcription	NH-A	brain
34	chr13:40231000-40234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr13:40231000-40234200	Weak transcription	Osteobl	bone
36	chr13:40231000-40234400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:40231000-40234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr13:40231000-40234400	Weak transcription	Adipose Nuclei	Adipose
39	chr13:40231000-40234400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr13:40231000-40234400	Weak transcription	Fetal Lung	lung
41	chr13:40231000-40234400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr13:40231000-40234400	Weak transcription	HUVEC	blood vessel
43	chr13:40231000-40234400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr13:40231000-40234600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr13:40231000-40234800	Weak transcription	Liver	Liver
46	chr13:40231000-40234800	Weak transcription	NHDF-Ad	bronchial
47	chr13:40231000-40235000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr13:40231000-40235000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr13:40231000-40235400	Weak transcription	Primary B cells from cord blood	blood
50	chr13:40231000-40237800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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