Variant report

Variant	rs73459943
Chromosome Location	chr13:40311499-40311500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11839208	1.00[AMR][1000 genomes]
rs11840841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463989	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1054797	chr13:40198744-40618428	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541755	chr13:40198744-40618428	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv832586	chr13:40222880-40379063	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1040458	chr13:40249387-40638129	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv471130	chr13:40261945-40350912	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40255800-40340200	Weak transcription	Psoas Muscle	Psoas
2	chr13:40267600-40341200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:40274600-40327000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr13:40285200-40317600	Weak transcription	Small Intestine	intestine
5	chr13:40286200-40332200	Weak transcription	Esophagus	oesophagus
6	chr13:40287400-40313000	Weak transcription	NHEK	skin
7	chr13:40290600-40328600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:40292000-40313400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:40292400-40314800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:40293000-40340800	Weak transcription	Colon Smooth Muscle	Colon
11	chr13:40293400-40312600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:40293600-40329000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr13:40294200-40339200	Weak transcription	Fetal Brain Male	brain
14	chr13:40294600-40327800	Weak transcription	NH-A	brain
15	chr13:40296600-40312800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr13:40297600-40339800	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:40297800-40313000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:40297800-40329800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr13:40298400-40314400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:40299200-40313000	Weak transcription	HMEC	breast
21	chr13:40299200-40327600	Weak transcription	Fetal Heart	heart
22	chr13:40300800-40314400	Weak transcription	Primary B cells from cord blood	blood
23	chr13:40301600-40312600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr13:40302000-40328800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr13:40302400-40311600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr13:40302400-40312200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr13:40302400-40314600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr13:40302600-40312600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr13:40302600-40315800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr13:40303400-40314000	Weak transcription	NHLF	lung
31	chr13:40303600-40312800	Weak transcription	Colonic Mucosa	Colon
32	chr13:40303800-40316000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr13:40304000-40328800	Weak transcription	Dnd41	blood
34	chr13:40304600-40340000	Weak transcription	Osteobl	bone
35	chr13:40306000-40313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr13:40306200-40312800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:40306400-40327400	Weak transcription	HUVEC	blood vessel
38	chr13:40306600-40325200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr13:40306800-40315000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:40307600-40329400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr13:40309200-40311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr13:40309200-40331400	Weak transcription	Stomach Mucosa	stomach
43	chr13:40309200-40334600	Weak transcription	HepG2	liver
44	chr13:40309800-40312400	Weak transcription	GM12878-XiMat	blood
45	chr13:40310000-40312000	Strong transcription	Fetal Lung	lung
46	chr13:40310000-40312200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr13:40310000-40313800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr13:40310200-40311600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr13:40310200-40311600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr13:40310200-40311600	Strong transcription	Adipose Nuclei	Adipose

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