Variant report

Variant	rs11839596
Chromosome Location	chr13:94615583-94615584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11838698	1.00[EUR][1000 genomes]
rs11839749	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1536777	1.00[EUR][1000 genomes]
rs1536778	1.00[EUR][1000 genomes]
rs2183100	1.00[EUR][1000 genomes]
rs56173854	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60143898	1.00[AMR][1000 genomes]
rs61091522	1.00[AMR][1000 genomes]
rs7326170	1.00[EUR][1000 genomes]
rs74109137	1.00[AMR][1000 genomes]
rs74109139	1.00[AMR][1000 genomes]
rs74109166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74109168	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109169	1.00[AMR][1000 genomes]
rs74109171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111413	1.00[EUR][1000 genomes]
rs74111414	1.00[EUR][1000 genomes]
rs74111420	1.00[EUR][1000 genomes]
rs74111421	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94609200-94618200	Weak transcription	Liver	Liver
2	chr13:94609800-94618000	Weak transcription	Fetal Stomach	stomach
3	chr13:94610600-94615600	Weak transcription	Fetal Lung	lung
4	chr13:94612800-94616000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:94614200-94615600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr13:94614200-94615800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:94614400-94615600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:94614400-94616000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:94615000-94620200	Enhancers	HepG2	liver
10	chr13:94615200-94616800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:94615400-94615600	Enhancers	A549	lung
12	chr13:94615400-94616000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr13:94615400-94616600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:94615400-94617200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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