Variant report
| Variant | rs11841891 |
|---|---|
| Chromosome Location | chr13:39156764-39156765 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:38444100..38445028-chr13:39156051..39157017,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000133107 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10507474 | 0.92[YRI][hapmap] |
| rs11840022 | 1.00[EUR][1000 genomes] |
| rs11840421 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11840494 | 1.00[EUR][1000 genomes] |
| rs11841861 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17058280 | 1.00[EUR][1000 genomes] |
| rs17058288 | 1.00[EUR][1000 genomes] |
| rs17058294 | 1.00[EUR][1000 genomes] |
| rs41292749 | 0.91[AFR][1000 genomes] |
| rs55731466 | 1.00[EUR][1000 genomes] |
| rs55999507 | 1.00[EUR][1000 genomes] |
| rs56002018 | 1.00[EUR][1000 genomes] |
| rs58251872 | 1.00[EUR][1000 genomes] |
| rs59102087 | 1.00[EUR][1000 genomes] |
| rs60253921 | 0.82[AFR][1000 genomes] |
| rs73450054 | 1.00[EUR][1000 genomes] |
| rs74050066 | 1.00[EUR][1000 genomes] |
| rs74050067 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74050068 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832584 | chr13:39074265-39284724 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
