Variant report
| Variant | rs41292749 |
|---|---|
| Chromosome Location | chr13:39151754-39151755 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FREM2-1 | chr13:39151742-39151847 | XLOC_010352 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs11840421 | 0.91[AFR][1000 genomes] |
| rs11841861 | 0.91[AFR][1000 genomes] |
| rs11841891 | 0.91[AFR][1000 genomes] |
| rs2323881 | 1.00[EUR][1000 genomes] |
| rs2323935 | 1.00[EUR][1000 genomes] |
| rs2323936 | 1.00[EUR][1000 genomes] |
| rs2323937 | 1.00[EUR][1000 genomes] |
| rs2323938 | 1.00[EUR][1000 genomes] |
| rs2323939 | 1.00[EUR][1000 genomes] |
| rs2323940 | 0.86[EUR][1000 genomes] |
| rs41292747 | 1.00[EUR][1000 genomes] |
| rs4341642 | 0.86[ASN][1000 genomes] |
| rs4344602 | 0.86[ASN][1000 genomes] |
| rs56329947 | 0.93[EUR][1000 genomes] |
| rs58511701 | 0.81[AFR][1000 genomes] |
| rs60253921 | 0.84[AFR][1000 genomes] |
| rs7139942 | 0.91[ASN][1000 genomes] |
| rs73180715 | 0.93[EUR][1000 genomes] |
| rs73180716 | 0.93[EUR][1000 genomes] |
| rs73180718 | 0.93[EUR][1000 genomes] |
| rs73180719 | 0.86[EUR][1000 genomes] |
| rs73180721 | 0.93[EUR][1000 genomes] |
| rs73180722 | 0.93[EUR][1000 genomes] |
| rs73180723 | 0.93[EUR][1000 genomes] |
| rs73180725 | 0.93[EUR][1000 genomes] |
| rs73180728 | 0.93[EUR][1000 genomes] |
| rs73180729 | 0.93[EUR][1000 genomes] |
| rs73180730 | 0.93[EUR][1000 genomes] |
| rs73180731 | 1.00[EUR][1000 genomes] |
| rs73180736 | 1.00[EUR][1000 genomes] |
| rs73180738 | 1.00[EUR][1000 genomes] |
| rs73180740 | 1.00[EUR][1000 genomes] |
| rs73180752 | 1.00[EUR][1000 genomes] |
| rs73180753 | 1.00[EUR][1000 genomes] |
| rs73182787 | 1.00[EUR][1000 genomes] |
| rs73182788 | 1.00[EUR][1000 genomes] |
| rs73182798 | 1.00[EUR][1000 genomes] |
| rs73182800 | 1.00[EUR][1000 genomes] |
| rs7318447 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7331928 | 1.00[EUR][1000 genomes] |
| rs73464368 | 0.85[EUR][1000 genomes] |
| rs73464376 | 0.85[EUR][1000 genomes] |
| rs9532255 | 1.00[EUR][1000 genomes] |
| rs9548386 | 1.00[EUR][1000 genomes] |
| rs9548395 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832584 | chr13:39074265-39284724 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39151000-39151800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
