Variant report

Variant	rs9548386
Chromosome Location	chr13:39111365-39111366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10514844	1.00[ASN][1000 genomes]
rs11693	1.00[CHB][hapmap]
rs11840670	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1330958	1.00[CHB][hapmap]
rs1330960	1.00[CHB][hapmap]
rs1330963	1.00[CHB][hapmap]
rs1330964	1.00[CHB][hapmap]
rs1330965	1.00[CHB][hapmap]
rs1501853	1.00[ASN][1000 genomes]
rs1553300	1.00[CHB][hapmap]
rs1576610	1.00[CHB][hapmap]
rs17057738	1.00[ASN][1000 genomes]
rs17057757	1.00[ASN][1000 genomes]
rs17231243	1.00[ASN][1000 genomes]
rs17233628	1.00[ASN][1000 genomes]
rs17299513	1.00[ASN][1000 genomes]
rs1868462	1.00[ASN][1000 genomes]
rs1878948	1.00[ASN][1000 genomes]
rs1980984	1.00[CHB][hapmap]
rs2019520	1.00[CHB][hapmap]
rs2150468	1.00[CHB][hapmap]
rs2150469	1.00[CHB][hapmap]
rs2231323	1.00[CHB][hapmap]
rs2231328	1.00[CHB][hapmap]
rs2231330	1.00[CHB][hapmap]
rs2231331	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2231332	1.00[CHB][hapmap]
rs2323881	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323937	1.00[EUR][1000 genomes]
rs2323938	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323940	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481877	1.00[CHB][hapmap]
rs2481879	1.00[CHB][hapmap]
rs2481880	1.00[CHB][hapmap]
rs2485783	1.00[CHB][hapmap]
rs2485785	1.00[CHB][hapmap]
rs2485786	1.00[CHB][hapmap]
rs2485789	1.00[CHB][hapmap]
rs2496466	1.00[ASN][1000 genomes]
rs2496473	1.00[CHB][hapmap]
rs2496475	1.00[CHB][hapmap]
rs2496476	1.00[CHB][hapmap]
rs2595563	1.00[ASN][1000 genomes]
rs41292747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292749	1.00[EUR][1000 genomes]
rs4310732	1.00[ASN][1000 genomes]
rs4943583	1.00[CHB][hapmap]
rs4943584	1.00[CHB][hapmap]
rs4943585	1.00[CHB][hapmap]
rs526103	1.00[ASN][1000 genomes]
rs55671132	1.00[ASN][1000 genomes]
rs56329947	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58014955	1.00[ASN][1000 genomes]
rs608497	1.00[ASN][1000 genomes]
rs61087779	1.00[ASN][1000 genomes]
rs61569024	1.00[ASN][1000 genomes]
rs652460	1.00[ASN][1000 genomes]
rs6563610	1.00[ASN][1000 genomes]
rs6563625	1.00[CEU][hapmap]
rs73180715	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180716	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180718	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180719	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180721	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180722	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180723	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180725	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180729	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180730	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180738	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318447	1.00[EUR][1000 genomes]
rs7331510	1.00[ASN][1000 genomes]
rs7331928	1.00[EUR][1000 genomes]
rs7334232	1.00[ASN][1000 genomes]
rs73453974	1.00[ASN][1000 genomes]
rs73453988	1.00[ASN][1000 genomes]
rs73453989	1.00[ASN][1000 genomes]
rs73454002	1.00[ASN][1000 genomes]
rs73460238	1.00[ASN][1000 genomes]
rs73460239	1.00[ASN][1000 genomes]
rs73460244	1.00[ASN][1000 genomes]
rs73462348	1.00[ASN][1000 genomes]
rs73464368	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73464376	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285122	1.00[CHB][hapmap]
rs9532209	1.00[CHB][hapmap]
rs9532255	1.00[EUR][1000 genomes]
rs9548318	1.00[CHB][hapmap]
rs9548395	0.93[EUR][1000 genomes]
rs986773	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39109200-39113200	Enhancers	Brain Germinal Matrix	brain
2	chr13:39109600-39112400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:39109600-39112400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:39110800-39113000	Enhancers	Fetal Brain Female	brain
5	chr13:39111000-39111800	Enhancers	Fetal Brain Male	brain

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