Variant report

Variant	rs73464368
Chromosome Location	chr13:39054524-39054525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10514844	1.00[ASN][1000 genomes]
rs11840670	1.00[ASN][1000 genomes]
rs1330967	1.00[ASN][1000 genomes]
rs1330976	1.00[ASN][1000 genomes]
rs1501853	1.00[ASN][1000 genomes]
rs17057716	1.00[ASN][1000 genomes]
rs17057738	1.00[ASN][1000 genomes]
rs17057757	1.00[ASN][1000 genomes]
rs17230677	1.00[ASN][1000 genomes]
rs17231243	1.00[ASN][1000 genomes]
rs17233628	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17296794	1.00[ASN][1000 genomes]
rs17299513	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1868462	1.00[ASN][1000 genomes]
rs1878948	1.00[ASN][1000 genomes]
rs2094893	1.00[ASN][1000 genomes]
rs2104818	1.00[ASN][1000 genomes]
rs2231331	1.00[ASN][1000 genomes]
rs2323881	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323935	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323936	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323937	0.85[EUR][1000 genomes]
rs2323938	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323939	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323940	1.00[ASN][1000 genomes]
rs2496466	1.00[ASN][1000 genomes]
rs2595563	1.00[ASN][1000 genomes]
rs41292747	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292749	0.85[EUR][1000 genomes]
rs4310732	1.00[ASN][1000 genomes]
rs514830	1.00[ASN][1000 genomes]
rs526103	1.00[ASN][1000 genomes]
rs546681	1.00[ASN][1000 genomes]
rs552296	1.00[ASN][1000 genomes]
rs55671132	1.00[ASN][1000 genomes]
rs56329947	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58014955	1.00[ASN][1000 genomes]
rs605579	1.00[ASN][1000 genomes]
rs608497	1.00[ASN][1000 genomes]
rs61087779	1.00[ASN][1000 genomes]
rs61569024	1.00[ASN][1000 genomes]
rs652460	1.00[ASN][1000 genomes]
rs6563610	1.00[ASN][1000 genomes]
rs7317565	1.00[ASN][1000 genomes]
rs73180715	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180716	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180718	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180719	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180721	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180722	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180723	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180725	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180729	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180730	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180731	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180736	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180738	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180740	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180752	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180753	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182787	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182788	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182798	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182800	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318447	0.85[EUR][1000 genomes]
rs7331510	1.00[ASN][1000 genomes]
rs7331928	0.85[EUR][1000 genomes]
rs7334232	1.00[ASN][1000 genomes]
rs73453974	1.00[ASN][1000 genomes]
rs73453988	1.00[ASN][1000 genomes]
rs73453989	1.00[ASN][1000 genomes]
rs73454002	1.00[ASN][1000 genomes]
rs73460206	1.00[ASN][1000 genomes]
rs73460223	1.00[ASN][1000 genomes]
rs73460238	1.00[ASN][1000 genomes]
rs73460239	1.00[ASN][1000 genomes]
rs73460244	1.00[ASN][1000 genomes]
rs73462348	1.00[ASN][1000 genomes]
rs73464376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74047533	1.00[ASN][1000 genomes]
rs9532255	0.85[EUR][1000 genomes]
rs9548386	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594267	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1817566	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1828009	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv561513	chr13:39022191-39060049	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv561514	chr13:39033242-39064286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1800401	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1803634	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1831414	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv561515	chr13:39052328-39059834	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv561516	chr13:39052328-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv561517	chr13:39052328-39064286	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1842234	chr13:39052556-39059834	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1834789	chr13:39052556-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1797776	chr13:39052556-39075865	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39046200-39061800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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