Variant report

Variant	rs73460239
Chromosome Location	chr13:38902141-38902142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10514844	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330967	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330968	0.85[EUR][1000 genomes]
rs1330976	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501853	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057716	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057738	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230677	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231243	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233628	1.00[ASN][1000 genomes]
rs17296794	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297214	0.93[EUR][1000 genomes]
rs17299513	1.00[ASN][1000 genomes]
rs1878948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094893	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104818	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231331	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323881	1.00[ASN][1000 genomes]
rs2323935	1.00[ASN][1000 genomes]
rs2323936	1.00[ASN][1000 genomes]
rs2323938	1.00[ASN][1000 genomes]
rs2323939	1.00[ASN][1000 genomes]
rs2323940	1.00[ASN][1000 genomes]
rs2496466	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4310732	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs514830	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671132	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329947	1.00[ASN][1000 genomes]
rs58014955	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61087779	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61569024	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652460	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563610	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671045	0.85[EUR][1000 genomes]
rs7317565	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180715	1.00[ASN][1000 genomes]
rs73180716	1.00[ASN][1000 genomes]
rs73180718	1.00[ASN][1000 genomes]
rs73180719	1.00[ASN][1000 genomes]
rs73180721	1.00[ASN][1000 genomes]
rs73180722	1.00[ASN][1000 genomes]
rs73180723	1.00[ASN][1000 genomes]
rs73180725	1.00[ASN][1000 genomes]
rs73180728	1.00[ASN][1000 genomes]
rs73180729	1.00[ASN][1000 genomes]
rs73180730	1.00[ASN][1000 genomes]
rs73180731	1.00[ASN][1000 genomes]
rs7334232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460206	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460223	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460238	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462348	1.00[ASN][1000 genomes]
rs73464368	1.00[ASN][1000 genomes]
rs73464376	1.00[ASN][1000 genomes]
rs74047533	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548386	1.00[ASN][1000 genomes]
rs9594267	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38901600-38902600	Active TSS	HMEC	breast
2	chr13:38901600-38902800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links