Variant report

Variant	rs17297214
Chromosome Location	chr13:38909779-38909780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:38909701..38912045-chr13:38922685..38924835,2	MCF-7	breast:
2	chr13:38902336..38904691-chr13:38908487..38911212,2	K562	blood:
3	chr13:38908685..38912062-chr13:38921532..38925068,4	K562	blood:

Variant related genes	Relation type
ENSG00000120686	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10514844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330967	0.85[EUR][1000 genomes]
rs1330976	0.93[EUR][1000 genomes]
rs1501853	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17057716	0.93[EUR][1000 genomes]
rs17057738	0.93[EUR][1000 genomes]
rs17057757	0.93[EUR][1000 genomes]
rs17230677	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17231243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17296794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1878948	0.93[EUR][1000 genomes]
rs2094893	0.93[EUR][1000 genomes]
rs2104818	0.93[EUR][1000 genomes]
rs2231331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2496466	1.00[EUR][1000 genomes]
rs4310732	1.00[EUR][1000 genomes]
rs514830	0.92[EUR][1000 genomes]
rs526103	0.93[EUR][1000 genomes]
rs546681	0.93[EUR][1000 genomes]
rs552296	0.93[EUR][1000 genomes]
rs55671132	0.93[EUR][1000 genomes]
rs58014955	0.93[EUR][1000 genomes]
rs605579	0.93[EUR][1000 genomes]
rs608497	0.93[EUR][1000 genomes]
rs61087779	0.93[EUR][1000 genomes]
rs61569024	0.93[EUR][1000 genomes]
rs652460	1.00[EUR][1000 genomes]
rs6563610	0.93[EUR][1000 genomes]
rs7317565	0.93[EUR][1000 genomes]
rs7334232	0.93[EUR][1000 genomes]
rs73460206	1.00[EUR][1000 genomes]
rs73460223	0.93[EUR][1000 genomes]
rs73460238	0.93[EUR][1000 genomes]
rs73460239	0.93[EUR][1000 genomes]
rs73460244	0.93[EUR][1000 genomes]
rs74047533	0.93[EUR][1000 genomes]
rs9594267	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38902800-38919600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38908600-38910800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:38908800-38911000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:38909000-38910600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr13:38909000-38910800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:38909200-38911000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:38909200-38911200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:38909400-38909800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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