Variant report

Variant	rs9594267
Chromosome Location	chr13:38878243-38878244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38874342..38876154-chr13:38877092..38878824,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10514844	1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693	1.00[CHB][hapmap]
rs1330964	1.00[CHB][hapmap]
rs1330965	1.00[CHB][hapmap]
rs1330967	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330968	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1330976	1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501853	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553300	1.00[CHB][hapmap]
rs17057716	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057738	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057757	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230677	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231243	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233628	1.00[ASN][1000 genomes]
rs17296794	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297214	0.85[EUR][1000 genomes]
rs17299513	1.00[ASN][1000 genomes]
rs1854810	0.85[AFR][1000 genomes]
rs1878948	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094893	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104818	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150468	1.00[CHB][hapmap]
rs2231328	1.00[CHB][hapmap]
rs2231331	1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481877	1.00[CHB][hapmap]
rs2481880	1.00[CHB][hapmap]
rs2485783	1.00[CHB][hapmap]
rs2496466	1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4310732	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943581	0.81[AFR][1000 genomes]
rs4943583	1.00[CHB][hapmap]
rs514830	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526103	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546681	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552296	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58014955	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605579	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608497	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61087779	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61569024	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652460	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563610	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317565	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180715	1.00[ASN][1000 genomes]
rs73180716	1.00[ASN][1000 genomes]
rs7334232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460206	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460223	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460238	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460239	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460244	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462348	1.00[ASN][1000 genomes]
rs73464368	1.00[ASN][1000 genomes]
rs73464376	1.00[ASN][1000 genomes]
rs74047533	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532209	1.00[CHB][hapmap]
rs9548318	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900004	chr13:38803974-38900435	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38870000-38882000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38877600-38878600	Enhancers	Fetal Brain Male	brain

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