Variant report

Variant	rs1330976
Chromosome Location	chr13:38899636-38899637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10514844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1330958	1.00[CEU][hapmap]
rs1330960	1.00[CEU][hapmap]
rs1330964	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1330965	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1330967	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330968	0.85[EUR][1000 genomes]
rs1501853	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553300	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1576610	1.00[CEU][hapmap]
rs17057716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17057757	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230677	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231243	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233628	1.00[ASN][1000 genomes]
rs17296794	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297214	0.93[EUR][1000 genomes]
rs17299513	1.00[ASN][1000 genomes]
rs1878948	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980984	1.00[CEU][hapmap]
rs2019520	1.00[CEU][hapmap]
rs2094893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150468	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2150469	1.00[CEU][hapmap]
rs2231323	1.00[CEU][hapmap]
rs2231328	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2231330	1.00[CEU][hapmap]
rs2231331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231332	1.00[CEU][hapmap]
rs2323881	1.00[ASN][1000 genomes]
rs2323935	1.00[ASN][1000 genomes]
rs2323936	1.00[ASN][1000 genomes]
rs2323938	1.00[ASN][1000 genomes]
rs2323939	1.00[ASN][1000 genomes]
rs2323940	1.00[ASN][1000 genomes]
rs2481877	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2481879	1.00[CEU][hapmap]
rs2481880	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2485783	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2485785	1.00[CEU][hapmap]
rs2485786	1.00[CEU][hapmap]
rs2496466	1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496473	1.00[CEU][hapmap]
rs2496475	1.00[CEU][hapmap]
rs2496476	1.00[CEU][hapmap]
rs4310732	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943583	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4943584	1.00[CEU][hapmap]
rs4943585	1.00[CEU][hapmap]
rs514830	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329947	1.00[ASN][1000 genomes]
rs58014955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61087779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61569024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652460	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563610	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671045	0.85[EUR][1000 genomes]
rs7317565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180715	1.00[ASN][1000 genomes]
rs73180716	1.00[ASN][1000 genomes]
rs73180718	1.00[ASN][1000 genomes]
rs73180719	1.00[ASN][1000 genomes]
rs73180721	1.00[ASN][1000 genomes]
rs73180722	1.00[ASN][1000 genomes]
rs73180723	1.00[ASN][1000 genomes]
rs73180725	1.00[ASN][1000 genomes]
rs73180728	1.00[ASN][1000 genomes]
rs73180729	1.00[ASN][1000 genomes]
rs73180730	1.00[ASN][1000 genomes]
rs73180731	1.00[ASN][1000 genomes]
rs7334232	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460206	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460239	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460244	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462348	1.00[ASN][1000 genomes]
rs73464368	1.00[ASN][1000 genomes]
rs73464376	1.00[ASN][1000 genomes]
rs74047533	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285122	1.00[CEU][hapmap]
rs9532209	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9548318	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9594267	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900004	chr13:38803974-38900435	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38895800-38901600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links