Variant report

Variant	rs17299513
Chromosome Location	chr13:38976008-38976009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10514844	1.00[ASN][1000 genomes]
rs1330967	1.00[ASN][1000 genomes]
rs1330976	1.00[ASN][1000 genomes]
rs1501853	1.00[ASN][1000 genomes]
rs17057716	1.00[ASN][1000 genomes]
rs17057738	1.00[ASN][1000 genomes]
rs17057757	1.00[ASN][1000 genomes]
rs17230677	1.00[ASN][1000 genomes]
rs17231243	1.00[ASN][1000 genomes]
rs17233628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296794	1.00[ASN][1000 genomes]
rs1878948	1.00[ASN][1000 genomes]
rs2094893	1.00[ASN][1000 genomes]
rs2104818	1.00[ASN][1000 genomes]
rs2231331	1.00[ASN][1000 genomes]
rs2323881	1.00[ASN][1000 genomes]
rs2323935	1.00[ASN][1000 genomes]
rs2323936	1.00[ASN][1000 genomes]
rs2323938	1.00[ASN][1000 genomes]
rs2323939	1.00[ASN][1000 genomes]
rs2323940	1.00[ASN][1000 genomes]
rs2496466	1.00[ASN][1000 genomes]
rs41292747	1.00[ASN][1000 genomes]
rs4310732	1.00[ASN][1000 genomes]
rs514830	1.00[ASN][1000 genomes]
rs526103	1.00[ASN][1000 genomes]
rs546681	1.00[ASN][1000 genomes]
rs552296	1.00[ASN][1000 genomes]
rs55671132	1.00[ASN][1000 genomes]
rs56329947	1.00[ASN][1000 genomes]
rs58014955	1.00[ASN][1000 genomes]
rs605579	1.00[ASN][1000 genomes]
rs608497	1.00[ASN][1000 genomes]
rs61087779	1.00[ASN][1000 genomes]
rs61569024	1.00[ASN][1000 genomes]
rs652460	1.00[ASN][1000 genomes]
rs6563610	1.00[ASN][1000 genomes]
rs7317565	1.00[ASN][1000 genomes]
rs73180715	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73180716	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73180718	1.00[ASN][1000 genomes]
rs73180719	1.00[ASN][1000 genomes]
rs73180721	1.00[ASN][1000 genomes]
rs73180722	1.00[ASN][1000 genomes]
rs73180723	1.00[ASN][1000 genomes]
rs73180725	1.00[ASN][1000 genomes]
rs73180728	1.00[ASN][1000 genomes]
rs73180729	1.00[ASN][1000 genomes]
rs73180730	1.00[ASN][1000 genomes]
rs73180731	1.00[ASN][1000 genomes]
rs73180736	1.00[ASN][1000 genomes]
rs73180738	1.00[ASN][1000 genomes]
rs73180740	1.00[ASN][1000 genomes]
rs73180752	1.00[ASN][1000 genomes]
rs73180753	1.00[ASN][1000 genomes]
rs73182787	1.00[ASN][1000 genomes]
rs73182788	1.00[ASN][1000 genomes]
rs73182798	1.00[ASN][1000 genomes]
rs7334232	1.00[ASN][1000 genomes]
rs73460206	1.00[ASN][1000 genomes]
rs73460223	1.00[ASN][1000 genomes]
rs73460238	1.00[ASN][1000 genomes]
rs73460239	1.00[ASN][1000 genomes]
rs73460244	1.00[ASN][1000 genomes]
rs73462348	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73464368	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73464376	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74047533	1.00[ASN][1000 genomes]
rs9548386	1.00[ASN][1000 genomes]
rs9594267	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1041977	chr13:38962265-39002924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38974000-38979000	Weak transcription	HMEC	breast
2	chr13:38974600-38977000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:38974800-38984000	Weak transcription	Hela-S3	cervix
4	chr13:38976000-38979000	Weak transcription	Ovary	ovary

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