Variant report

Variant	rs73464376
Chromosome Location	chr13:39057476-39057477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39057074..39058739-chr13:39059031..39060761,2	MCF-7	breast:

Extended variants
information (count: 227 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10514844	1.00[ASN][1000 genomes]
rs11840670	1.00[ASN][1000 genomes]
rs1330967	1.00[ASN][1000 genomes]
rs1330976	1.00[ASN][1000 genomes]
rs1501853	1.00[ASN][1000 genomes]
rs17057716	1.00[ASN][1000 genomes]
rs17057738	1.00[ASN][1000 genomes]
rs17057757	1.00[ASN][1000 genomes]
rs17230677	1.00[ASN][1000 genomes]
rs17231243	1.00[ASN][1000 genomes]
rs17233628	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17296794	1.00[ASN][1000 genomes]
rs17299513	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1868462	1.00[ASN][1000 genomes]
rs1878948	1.00[ASN][1000 genomes]
rs2094893	1.00[ASN][1000 genomes]
rs2104818	1.00[ASN][1000 genomes]
rs2231331	1.00[ASN][1000 genomes]
rs2323881	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323935	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323936	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323937	0.85[EUR][1000 genomes]
rs2323938	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323939	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323940	1.00[ASN][1000 genomes]
rs2496466	1.00[ASN][1000 genomes]
rs2595563	1.00[ASN][1000 genomes]
rs41292747	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292749	0.85[EUR][1000 genomes]
rs4310732	1.00[ASN][1000 genomes]
rs514830	1.00[ASN][1000 genomes]
rs526103	1.00[ASN][1000 genomes]
rs546681	1.00[ASN][1000 genomes]
rs552296	1.00[ASN][1000 genomes]
rs55671132	1.00[ASN][1000 genomes]
rs56329947	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58014955	1.00[ASN][1000 genomes]
rs605579	1.00[ASN][1000 genomes]
rs608497	1.00[ASN][1000 genomes]
rs61087779	1.00[ASN][1000 genomes]
rs61569024	1.00[ASN][1000 genomes]
rs652460	1.00[ASN][1000 genomes]
rs6563610	1.00[ASN][1000 genomes]
rs7317565	1.00[ASN][1000 genomes]
rs73180715	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180716	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180718	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180719	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180721	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180722	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180723	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180725	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180729	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180730	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180731	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180736	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180738	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180740	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180752	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73180753	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182787	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182788	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182798	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73182800	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318447	0.85[EUR][1000 genomes]
rs7331510	1.00[ASN][1000 genomes]
rs7331928	0.85[EUR][1000 genomes]
rs7334232	1.00[ASN][1000 genomes]
rs73453974	1.00[ASN][1000 genomes]
rs73453988	1.00[ASN][1000 genomes]
rs73453989	1.00[ASN][1000 genomes]
rs73454002	1.00[ASN][1000 genomes]
rs73460206	1.00[ASN][1000 genomes]
rs73460223	1.00[ASN][1000 genomes]
rs73460238	1.00[ASN][1000 genomes]
rs73460239	1.00[ASN][1000 genomes]
rs73460244	1.00[ASN][1000 genomes]
rs73462348	1.00[ASN][1000 genomes]
rs73464368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74047533	1.00[ASN][1000 genomes]
rs9532255	0.85[EUR][1000 genomes]
rs9548386	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594267	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:143 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1817566	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1828009	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv561513	chr13:39022191-39060049	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv561514	chr13:39033242-39064286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1800401	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1803634	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1831414	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv561515	chr13:39052328-39059834	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv561516	chr13:39052328-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv561517	chr13:39052328-39064286	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1842234	chr13:39052556-39059834	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1834789	chr13:39052556-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1797776	chr13:39052556-39075865	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv1805258	chr13:39054598-39060049	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv511512	chr13:39054598-39063247	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3506107	chr13:39055352-39062150	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3489526	chr13:39056202-39061300	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3506140	chr13:39056377-39061325	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3489532	chr13:39056602-39061225	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv996848	chr13:39056702-39061043	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2502260	chr13:39056767-39060844	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv512312	chr13:39056830-39060229	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3506085	chr13:39056852-39060612	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv561518	chr13:39056853-39059742	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv561519	chr13:39056853-39060049	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv2274077	chr13:39057142-39060398	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv976048	chr13:39057173-39060404	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3506074	chr13:39057209-39060307	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3489529	chr13:39057210-39060300	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3489525	chr13:39057222-39060296	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3489528	chr13:39057237-39060233	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3506063	chr13:39057241-39060273	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv3506129	chr13:39057247-39060269	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv3506096	chr13:39057257-39060226	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv3489533	chr13:39057258-39060252	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv3489527	chr13:39057269-39060236	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv3378191	chr13:39057278-39060222	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv3506118	chr13:39057300-39060209	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv1794735	chr13:39057300-39060362	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv1820389	chr13:39057300-39060362	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv1821807	chr13:39057300-39060362	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv1831607	chr13:39057300-39060362	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv1850345	chr13:39057300-39060362	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
45	esv1851858	chr13:39057300-39060362	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv826618	chr13:39057309-39059872	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv826619	chr13:39057309-39060031	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv826621	chr13:39057309-39060178	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv821013	chr13:39057309-39060191	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv826622	chr13:39057309-39060191	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39046200-39061800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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