Variant report

Variant	rs11840670
Chromosome Location	chr13:39192806-39192807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr13:39192377-39193201	MCF-7	breast:	n/a	chr13:39192925-39192934

Variant related genes	Relation type
PRDX3P3	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1868462	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323881	1.00[ASN][1000 genomes]
rs2323935	1.00[ASN][1000 genomes]
rs2323936	1.00[ASN][1000 genomes]
rs2323938	1.00[ASN][1000 genomes]
rs2323939	1.00[ASN][1000 genomes]
rs2323940	1.00[ASN][1000 genomes]
rs2595563	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292747	1.00[ASN][1000 genomes]
rs56329947	1.00[ASN][1000 genomes]
rs73180715	1.00[ASN][1000 genomes]
rs73180716	1.00[ASN][1000 genomes]
rs73180718	1.00[ASN][1000 genomes]
rs73180719	1.00[ASN][1000 genomes]
rs73180721	1.00[ASN][1000 genomes]
rs73180722	1.00[ASN][1000 genomes]
rs73180723	1.00[ASN][1000 genomes]
rs73180725	1.00[ASN][1000 genomes]
rs73180728	1.00[ASN][1000 genomes]
rs73180729	1.00[ASN][1000 genomes]
rs73180730	1.00[ASN][1000 genomes]
rs73180731	1.00[ASN][1000 genomes]
rs73180736	1.00[ASN][1000 genomes]
rs73180738	1.00[ASN][1000 genomes]
rs73180740	1.00[ASN][1000 genomes]
rs73180752	1.00[ASN][1000 genomes]
rs73180753	1.00[ASN][1000 genomes]
rs73182787	1.00[ASN][1000 genomes]
rs73182788	1.00[ASN][1000 genomes]
rs73182798	1.00[ASN][1000 genomes]
rs73182800	1.00[ASN][1000 genomes]
rs7331510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7333772	1.00[ASN][1000 genomes]
rs73453974	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73453988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73453989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73454002	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73464368	1.00[ASN][1000 genomes]
rs73464376	1.00[ASN][1000 genomes]
rs9548386	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39186400-39199200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:39187400-39198400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:39187800-39199200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:39188000-39205400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:39191600-39193600	Enhancers	Fetal Lung	lung
6	chr13:39192600-39193600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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