Variant report

Variant	rs4943581
Chromosome Location	chr13:38879486-38879487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11693	0.83[ASN][1000 genomes]
rs1330958	0.83[ASN][1000 genomes]
rs1330960	0.83[ASN][1000 genomes]
rs1330964	0.83[ASN][1000 genomes]
rs1330965	0.83[ASN][1000 genomes]
rs1330967	0.89[AFR][1000 genomes]
rs1330968	0.90[AFR][1000 genomes]
rs1360385	0.83[ASN][1000 genomes]
rs1553300	0.83[ASN][1000 genomes]
rs1576610	0.83[ASN][1000 genomes]
rs1576611	0.83[ASN][1000 genomes]
rs1854810	0.87[AFR][1000 genomes]
rs1980984	0.83[ASN][1000 genomes]
rs2019520	0.83[ASN][1000 genomes]
rs2150468	0.83[ASN][1000 genomes]
rs2150469	0.83[ASN][1000 genomes]
rs2231323	0.83[ASN][1000 genomes]
rs2231328	0.83[ASN][1000 genomes]
rs2231330	0.83[ASN][1000 genomes]
rs2231332	0.83[ASN][1000 genomes]
rs2455412	0.83[ASN][1000 genomes]
rs2481876	0.83[ASN][1000 genomes]
rs2481877	0.83[ASN][1000 genomes]
rs2481879	0.83[ASN][1000 genomes]
rs2481880	0.83[ASN][1000 genomes]
rs2485783	0.83[ASN][1000 genomes]
rs2485785	0.83[ASN][1000 genomes]
rs2485786	0.83[ASN][1000 genomes]
rs2485789	0.83[ASN][1000 genomes]
rs2496456	0.83[ASN][1000 genomes]
rs2496473	0.83[ASN][1000 genomes]
rs2496475	0.83[ASN][1000 genomes]
rs2496476	0.83[ASN][1000 genomes]
rs4943583	0.83[ASN][1000 genomes]
rs4943584	0.83[ASN][1000 genomes]
rs4943585	0.83[ASN][1000 genomes]
rs4943586	0.83[ASN][1000 genomes]
rs6563608	0.83[ASN][1000 genomes]
rs6563609	0.83[ASN][1000 genomes]
rs7326028	0.83[ASN][1000 genomes]
rs7326913	0.83[ASN][1000 genomes]
rs7332974	0.83[ASN][1000 genomes]
rs7335723	0.83[ASN][1000 genomes]
rs7338958	0.83[ASN][1000 genomes]
rs74047524	0.83[ASN][1000 genomes]
rs9285122	0.83[ASN][1000 genomes]
rs9532209	0.83[ASN][1000 genomes]
rs9532218	0.83[ASN][1000 genomes]
rs9548318	0.83[ASN][1000 genomes]
rs9548320	0.83[ASN][1000 genomes]
rs9594267	0.81[AFR][1000 genomes]
rs9603368	0.83[ASN][1000 genomes]
rs986773	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900004	chr13:38803974-38900435	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38870000-38882000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links