Variant report

Variant	rs1360385
Chromosome Location	chr13:38937957-38937958
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:38931254..38934078-chr13:38935864..38939575,4	K562	blood:
2	chr13:38936992..38939468-chr13:38949359..38952511,3	K562	blood:
3	chr13:38928524..38930936-chr13:38934503..38937982,3	K562	blood:
4	chr13:38937794..38939477-chr13:38941816..38944782,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10514844	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330958	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330963	1.00[CHB][hapmap]
rs1330964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330976	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1553300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576611	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231331	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2231332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481876	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481880	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485783	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485785	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485788	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2485789	1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496466	1.00[CHB][hapmap]
rs2496473	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943581	0.83[ASN][1000 genomes]
rs4943583	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943586	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563608	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563609	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335723	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338958	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285122	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548320	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603368	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986773	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1851668	chr13:38928976-38948851	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38924400-38938800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:38924800-38939000	Weak transcription	Lung	lung
3	chr13:38924800-38939400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:38925200-38939600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:38925600-38938000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:38925600-38938000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:38925600-38939200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:38925800-38938400	Weak transcription	Fetal Stomach	stomach
9	chr13:38925800-38939000	Weak transcription	Spleen	Spleen
10	chr13:38925800-38939400	Weak transcription	Thymus	Thymus
11	chr13:38925800-38939800	Weak transcription	Small Intestine	intestine
12	chr13:38926000-38938000	Strong transcription	Osteobl	bone
13	chr13:38926000-38938800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr13:38926000-38939000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:38926000-38939200	Weak transcription	Psoas Muscle	Psoas
16	chr13:38926000-38939400	Weak transcription	Brain Angular Gyrus	brain
17	chr13:38926000-38939800	Weak transcription	Brain Germinal Matrix	brain
18	chr13:38926200-38938000	Strong transcription	HSMM	muscle
19	chr13:38926200-38938000	Strong transcription	NH-A	brain
20	chr13:38926200-38939000	Weak transcription	Brain Hippocampus Middle	brain
21	chr13:38926200-38939200	Weak transcription	Right Ventricle	heart
22	chr13:38926200-38947000	Weak transcription	Ovary	ovary
23	chr13:38926200-38947000	Weak transcription	Hela-S3	cervix
24	chr13:38926600-38938200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr13:38926800-38938000	Strong transcription	Liver	Liver
26	chr13:38927000-38938000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:38927400-38943200	Weak transcription	K562	blood
28	chr13:38927600-38938000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:38927600-38938000	Strong transcription	Dnd41	blood
30	chr13:38927600-38938200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr13:38928000-38938000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:38928600-38939400	Weak transcription	Brain Substantia Nigra	brain
33	chr13:38928800-38938000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr13:38929400-38939600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr13:38929600-38939400	Weak transcription	Left Ventricle	heart
36	chr13:38929800-38939800	Weak transcription	HSMMtube	muscle
37	chr13:38930400-38938800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr13:38930600-38939400	Weak transcription	GM12878-XiMat	blood
39	chr13:38931400-38941000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr13:38932800-38938000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr13:38932800-38938000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr13:38933000-38938000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr13:38933200-38938000	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr13:38933200-38938000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr13:38933200-38938000	Strong transcription	Adipose Nuclei	Adipose
46	chr13:38933600-38939600	Weak transcription	A549	lung
47	chr13:38933600-38940400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr13:38933600-38943000	Weak transcription	Fetal Heart	heart
49	chr13:38933800-38939800	Weak transcription	NHDF-Ad	bronchial
50	chr13:38934200-38938000	Strong transcription	HUVEC	blood vessel

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