Variant report

Variant	rs2481876
Chromosome Location	chr13:38917314-38917315
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38913197..38918401-chr13:38928849..38932713,4	K562	blood:
2	chr13:38915558..38922004-chr13:38925835..38933064,8	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UFM1-6	chr13:38916887-38917605	NONHSAT033267

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11693	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330958	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330960	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330964	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330965	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360385	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553300	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576610	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576611	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980984	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019520	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150468	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150469	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231323	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231328	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231330	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231332	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455412	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481877	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481879	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2481880	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485783	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485785	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485786	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485789	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496456	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496473	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496475	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496476	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943581	0.83[ASN][1000 genomes]
rs4943583	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943584	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943585	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943586	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563608	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563609	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326028	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326913	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332974	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335723	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338958	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285122	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532209	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532218	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548318	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548320	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603368	1.00[ASN][1000 genomes]
rs986773	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3397337	chr13:38914852-38918050	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38902800-38919600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38910800-38920200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:38911000-38920200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr13:38913600-38920200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:38915800-38920200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:38915800-38922400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:38915800-38922800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links