Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11842094	0.84[AFR][1000 genomes]
rs2406324	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2406325	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2406326	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2406327	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4531630	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4567609	0.83[ASN][1000 genomes]
rs61951635	0.84[AFR][1000 genomes]
rs6561367	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap]
rs7320852	0.87[ASN][1000 genomes]
rs7329520	0.80[ASN][1000 genomes]
rs7999656	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs8001945	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9526304	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9526306	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9526307	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9526312	0.81[ASN][1000 genomes]
rs9534581	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9534593	0.82[JPT][hapmap]
rs9567825	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2761787	chr13:47900036-47908763	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47900800-47904400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:47901000-47906200	Weak transcription	NHDF-Ad	bronchial
3	chr13:47901200-47903000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:47901800-47905400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:47902000-47902800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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