Variant report

Variant	rs7329520
Chromosome Location	chr13:47905620-47905621
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11841943	0.80[ASN][1000 genomes]
rs12561429	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1962256	0.83[ASN][1000 genomes]
rs6561367	0.83[JPT][hapmap]
rs6561368	0.91[ASN][1000 genomes]
rs7999656	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs9526300	0.86[ASN][1000 genomes]
rs9526301	0.86[ASN][1000 genomes]
rs9526305	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9526307	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs9526312	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9526313	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9526315	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9534584	0.91[ASN][1000 genomes]
rs9534589	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9534590	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9534593	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs9562727	0.82[ASN][1000 genomes]
rs9567823	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2761787	chr13:47900036-47908763	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7329520	KCTD4	cis	parietal	SCAN
rs7329520	KCTD4	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47901000-47906200	Weak transcription	NHDF-Ad	bronchial
2	chr13:47904200-47907800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:47904600-47910200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:47905200-47906600	Weak transcription	Aorta	Aorta
5	chr13:47905400-47908000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:47905600-47909200	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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