Variant report

Variant	rs11842352
Chromosome Location	chr13:39272078-39272079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11843222	1.00[AMR][1000 genomes]
rs11843234	1.00[AMR][1000 genomes]
rs17058495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459877	1.00[AMR][1000 genomes]
rs73466323	1.00[AMR][1000 genomes]
rs73466348	1.00[AMR][1000 genomes]
rs73466367	1.00[AMR][1000 genomes]
rs73466371	1.00[AMR][1000 genomes]
rs73468319	1.00[AMR][1000 genomes]
rs73468320	1.00[AMR][1000 genomes]
rs73468321	1.00[AMR][1000 genomes]
rs73468343	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39263600-39275400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:39263800-39275400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:39264200-39276800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:39264400-39275800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:39265400-39275400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:39265800-39287200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:39268000-39284600	Weak transcription	Fetal Kidney	kidney
8	chr13:39268200-39276800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr13:39268200-39282400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:39268800-39272200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:39270600-39274000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:39271000-39272400	Enhancers	Fetal Muscle Leg	muscle
13	chr13:39271200-39272600	Enhancers	Fetal Heart	heart
14	chr13:39271600-39273000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr13:39271600-39276800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:39271800-39273000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr13:39272000-39272800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr13:39272000-39276800	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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