Variant report
| Variant | rs73468343 |
|---|---|
| Chromosome Location | chr13:39141445-39141446 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11842352 | 1.00[AMR][1000 genomes] |
| rs11843222 | 1.00[AMR][1000 genomes] |
| rs11843234 | 1.00[AMR][1000 genomes] |
| rs17058495 | 1.00[AMR][1000 genomes] |
| rs57455209 | 1.00[AMR][1000 genomes] |
| rs58119652 | 1.00[AMR][1000 genomes] |
| rs60891206 | 1.00[AFR][1000 genomes] |
| rs73450057 | 1.00[AFR][1000 genomes] |
| rs73450079 | 1.00[AFR][1000 genomes] |
| rs73452203 | 1.00[AFR][1000 genomes] |
| rs73452208 | 1.00[AFR][1000 genomes] |
| rs73453946 | 1.00[AFR][1000 genomes] |
| rs73459822 | 1.00[AMR][1000 genomes] |
| rs73459842 | 1.00[AMR][1000 genomes] |
| rs73459877 | 1.00[AMR][1000 genomes] |
| rs73462339 | 1.00[AMR][1000 genomes] |
| rs73462360 | 1.00[AMR][1000 genomes] |
| rs73462361 | 1.00[AMR][1000 genomes] |
| rs73462367 | 1.00[AMR][1000 genomes] |
| rs73464371 | 1.00[AMR][1000 genomes] |
| rs73464381 | 1.00[AMR][1000 genomes] |
| rs73466323 | 1.00[AMR][1000 genomes] |
| rs73466348 | 1.00[AMR][1000 genomes] |
| rs73466367 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73466371 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73468319 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73468320 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73468321 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832584 | chr13:39074265-39284724 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39139600-39141600 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr13:39140000-39141600 | Enhancers | Fetal Lung | lung |
