Variant report

Variant	rs73464381
Chromosome Location	chr13:39060576-39060577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39054749..39056526-chr13:39059043..39061059,2	MCF-7	breast:
2	chr13:39057074..39058739-chr13:39059031..39060761,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57455209	1.00[AMR][1000 genomes]
rs58119652	1.00[AMR][1000 genomes]
rs73462339	1.00[AMR][1000 genomes]
rs73462360	1.00[AMR][1000 genomes]
rs73462361	1.00[AMR][1000 genomes]
rs73462367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73462397	1.00[AFR][1000 genomes]
rs73464371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466323	1.00[AMR][1000 genomes]
rs73466348	1.00[AMR][1000 genomes]
rs73466367	1.00[AMR][1000 genomes]
rs73466371	1.00[AMR][1000 genomes]
rs73468319	1.00[AMR][1000 genomes]
rs73468320	1.00[AMR][1000 genomes]
rs73468321	1.00[AMR][1000 genomes]
rs73468343	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1817566	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1828009	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv561514	chr13:39033242-39064286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv561517	chr13:39052328-39064286	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1797776	chr13:39052556-39075865	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv511512	chr13:39054598-39063247	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3506107	chr13:39055352-39062150	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3489526	chr13:39056202-39061300	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3506140	chr13:39056377-39061325	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3489532	chr13:39056602-39061225	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv996848	chr13:39056702-39061043	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2502260	chr13:39056767-39060844	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3506085	chr13:39056852-39060612	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1799231	chr13:39057351-39063247	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1821331	chr13:39057351-39063247	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1822291	chr13:39057351-39063247	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1825586	chr13:39057351-39063247	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1801970	chr13:39057351-39065884	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1806979	chr13:39057351-39065884	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1808117	chr13:39057351-39065884	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1838555	chr13:39057351-39065884	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv561525	chr13:39057419-39064286	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1812185	chr13:39057419-39069009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv1818823	chr13:39057419-39069009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv561526	chr13:39057419-39069009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1799520	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv1801126	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv1807030	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	esv1820291	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	esv1820460	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	esv1829223	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	esv1829423	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39046200-39061800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links