Variant report

Variant	rs73462339
Chromosome Location	chr13:38970802-38970803
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57455209	1.00[AMR][1000 genomes]
rs58119652	1.00[AMR][1000 genomes]
rs73456089	1.00[AMR][1000 genomes]
rs73462360	1.00[AMR][1000 genomes]
rs73462361	1.00[AMR][1000 genomes]
rs73462367	1.00[AMR][1000 genomes]
rs73464371	1.00[AMR][1000 genomes]
rs73464381	1.00[AMR][1000 genomes]
rs73466323	1.00[AMR][1000 genomes]
rs73466348	1.00[AMR][1000 genomes]
rs73466367	1.00[AMR][1000 genomes]
rs73466371	1.00[AMR][1000 genomes]
rs73468319	1.00[AMR][1000 genomes]
rs73468320	1.00[AMR][1000 genomes]
rs73468321	1.00[AMR][1000 genomes]
rs73468343	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1041977	chr13:38962265-39002924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38969600-38972800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38969800-38972800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:38969800-38972800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:38969800-38972800	Weak transcription	NHDF-Ad	bronchial
5	chr13:38969800-38973000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:38969800-38975400	Weak transcription	Fetal Kidney	kidney
7	chr13:38970000-38972800	Weak transcription	Hela-S3	cervix
8	chr13:38970000-38972800	Weak transcription	NHEK	skin
9	chr13:38970000-38973000	Weak transcription	HMEC	breast
10	chr13:38970000-38973800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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