Variant report

Variant	rs11842861
Chromosome Location	chr13:76234651-76234652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76229874..76232136-chr13:76233228..76235959,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs9593107	0.87[AFR][1000 genomes]
rs9593110	1.00[AFR][1000 genomes]
rs9593114	1.00[AFR][1000 genomes]
rs9600510	0.87[AFR][1000 genomes]
rs9600512	0.87[AFR][1000 genomes]
rs9600513	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76211600-76235600	Weak transcription	Ovary	ovary
2	chr13:76211600-76235600	Weak transcription	Pancreas	Pancrea
3	chr13:76212200-76235600	Weak transcription	Aorta	Aorta
4	chr13:76212400-76240400	Weak transcription	HMEC	breast
5	chr13:76213400-76267800	Weak transcription	Primary T cells from cord blood	blood
6	chr13:76213800-76235600	Weak transcription	Psoas Muscle	Psoas
7	chr13:76215400-76258200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:76223200-76236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:76231200-76235800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:76231400-76234800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:76231400-76234800	Weak transcription	NHLF	lung
12	chr13:76231400-76240400	Weak transcription	HSMMtube	muscle
13	chr13:76231400-76240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:76231800-76240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:76232400-76235800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:76232600-76234800	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr13:76233800-76240600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:76234000-76236200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:76234000-76237200	Enhancers	NHDF-Ad	bronchial
20	chr13:76234000-76237200	Genic enhancers	Osteobl	bone
21	chr13:76234400-76236800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:76234400-76238400	Weak transcription	NH-A	brain
23	chr13:76234600-76235200	Enhancers	GM12878-XiMat	blood
24	chr13:76234600-76236600	Genic enhancers	HSMM	muscle
25	chr13:76234600-76236800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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